PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462915568
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family B3
Protein Properties Length: 781aa    MW: 87138.7 Da    PI: 7.996
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462915568genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.11.8e-147047751792
                E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
         B3  17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                +lp  f+ ++g+ +++++tl+   ++  sWev ++  kks+++  + GWk+F+++n+Lk+gD++++     se++l
  462915568 704 CLPAAFCHAIGIRETCTVTLKTSLSNTMSWEVCIQPYKKSSHH-VEPGWKRFCQENNLKVGDVCTINI---SETTL 775
                69*****999*99999766665557779999999666666566.566******************994...34444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.4E-14291390IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.06E-13292390IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.742294389IPR003340B3 DNA binding domain
CDDcd100176.44E-9295386No hitNo description
SMARTSM010191.7E-5297389IPR003340B3 DNA binding domain
SuperFamilySSF1019363.34E-9463552IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.96464553IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.1E-9465551IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.97691780IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.5E-12703774IPR015300DNA-binding pseudobarrel domain
PfamPF023627.1E-12704779IPR003340B3 DNA binding domain
SuperFamilySSF1019366.87E-12704770IPR015300DNA-binding pseudobarrel domain
CDDcd100175.35E-9705768No hitNo description
PROSITE profilePS5086310.348705781IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 781 aa     Download sequence    Send to blast
MDDNIHDTYD RCMHQYSCSL STSDNNLPQH SFNNFEGADV PFLEPVILAE PPPVLPQLVT  60
AILLDNMNLP EFGAVDKGLE RDDACDLPQH GFDNVEGTNV AFLKPVVLTE FLPTISKVAG  120
IVHRPRFGKR TFTCRRDAEL PDAEAGVERL DGEGAAAFVP ERDEPGDIDA VRRQELGPPA  180
AQERLLAFSF DLHAPDFAKR AHHEREAHVG GVEATGELLG DALQNEDQSL ECRRFRSINA  240
GLCLPAFRWE ETATASGAWP WRLLPVAARC RDLVEGEGSF AFEATMSSKG APRKPQFIGL  300
LSPDSMEKMP IPPEFVQRYL PKENLDIAVV LGPLDKKLWR IKLEMNQSDV LFAGRWPEFL  360
KFNHITKDNV LLLRYEANMV FTVKVFEPNG FQREYKQKDI RMQETVPDIE KQQEAQSASF  420
QKGKSKSNRT CTEGQNKPNG SMASLTEASS RKKCTYEIGP PAWITKCINA NALKKQLALP  480
TSFCDAIGLR ESCMITLKTS VNSAEDWKVH GVSCKKGSYL LVFFWENSLK EGDACTFNVV  540
ETSLWHVVIT RLKENINPPC NATPSASRGK CKNSKRRKIS VNSMNKSPKM GCNYNIGPPA  600
WVVKQMNNNT IKNRLGRSPV ETVLGSGPPL PDGRLGRIQP VIPLRHQSPL AFMSCYRMFA  660
CVRERKQDVR SKVQTILLYE AALSALAASC AHRQSLAPRA AEQCLPAAFC HAIGIRETCT  720
VTLKTSLSNT MSWEVCIQPY KKSSHHVEPG WKRFCQENNL KVGDVCTINI SETTLWHGAI  780
K
Cis-element ? help Back to Top
SourceLink
PlantRegMap462915568
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025808161.12e-94putative B3 domain-containing protein Os04g0347400 isoform X2
RefseqXP_025825039.13e-94putative B3 domain-containing protein Os04g0347400 isoform X1
TrEMBLA0A0A9RFZ71e-114A0A0A9RFZ7_ARUDO; Uncharacterized protein
STRINGPavir.Gb02050.1.p1e-91(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42535187
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.13e-08B3 family protein