PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462915556 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | B3 | ||||||||
Protein Properties | Length: 231aa MW: 26072 Da PI: 8.7693 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 43 | 8.3e-14 | 105 | 172 | 18 | 85 |
--HHH.HTT---..--SEEEEEE..TTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 18 lpkkfaeehggkkeesktltled..esgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkld 85 lp f+e++g++ ++ +++l++ +s+ sW+v++ ++++ y + GWk+F+++n++kegD+++F ++ 462915556 105 LPMVFCEAIGLP-DQPCMIMLKTtlSSSHSWQVRV--LPYKNTsYQRGLGWKSFCRENKIKEGDVCTFNFV 172 8999*****877.577888888865677*******..555544388899*******************965 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd10017 | 4.20E-13 | 92 | 173 | No hit | No description |
SMART | SM01019 | 2.8E-4 | 100 | 185 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 5.49E-14 | 102 | 184 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 8.1E-14 | 104 | 184 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 1.6E-11 | 104 | 183 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.082 | 105 | 185 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
MVHTFFVYFS FPFANVCTIE KKQEAPSASS QKCKSKTDKS SSEEQKASSK TRCAYMTGPP 60 AWIKKDINTN TIKRYLTTSQ TTTPYPSPPK NKILLGEHGY VTNALPMVFC EAIGLPDQPC 120 MIMLKTTLSS SHSWQVRVLP YKNTSYQRGL GWKSFCRENK IKEGDVCTFN FVEIRLWHVI 180 IERQSNSTCN DDMPQHGFYN VDGADVTYLE SVLLAKPLPS CPSMVAAVLV W |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462915556 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
STRING | Pavir.Gb02050.1.p | 4e-41 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP425 | 35 | 187 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31630.1 | 6e-07 | B3 family protein |