PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462915276
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family MYB_related
Protein Properties Length: 273aa    MW: 30331.9 Da    PI: 4.9124
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462915276genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.44.4e-10742743
                     HHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHH CS
  Myb_DNA-binding  7 eEdellvdavkqlGggtWktIartmgkgRtlkqcksr 43
                     +Edell + v+++G  +W t+ar ++ +R + qc+ r
        462915276  7 QEDELLTQMVNKHGLSNWQTVARAIP-NRNALQCRMR 42
                     7*************************.8888888865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.8159IPR017930Myb domain
SMARTSM007174.6E-5349IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-9648IPR009057Homeodomain-like
SuperFamilySSF466893.67E-9649IPR009057Homeodomain-like
PfamPF002493.9E-8744IPR001005SANT/Myb domain
CDDcd001677.58E-9742No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MRNRKRQEDE LLTQMVNKHG LSNWQTVARA IPNRNALQCR MRTNYNLKEY WRGPMKRKLD  60
SYLASGLLEQ VPDLHDDISA PDSSQSNIPK DSASLSDRKL ESPAFPTSPK SKEVCTEQGS  120
DSSEGECSDF TNAKGLSAHS AKASERIMAK SNQLAAARKK LDFLSTPVEL KVCNDAVSYQ  180
RPIPKMEQMN PSAKNISSSD VCQDGPPNVP SGCVDMALSE VATDYSNIVP SSETPQQCTL  240
DIHDDFASDL LDMSYCDDLM MDFPSFPHID NFI
Cis-element ? help Back to Top
SourceLink
PlantRegMap462915276
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025791248.16e-86transcription factor MYB3R-2-like
TrEMBLA0A0A9FY271e-109A0A0A9FY27_ARUDO; Uncharacterized protein
STRINGSi017903m3e-85(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP142631723
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11510.17e-10myb domain protein 3r-4