PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462915132

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

NAC

Protein Properties

Length: 478aa MW: 53326.3 Da PI: 4.697

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462915132	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	162.1	2.2e-50	9	136	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 lppGf FhP+d el+++yLk+k++g++++ ++i+evdiyk+ePwdLp+ ++ e+++w+fFs+rd+ky+tg ++nr+t++gyWk+tgkd++++ +++ 462915132 9 LPPGFGFHPSDAELISHYLKRKIHGQRIDY-DIIPEVDIYKHEPWDLPSkcNLPIEDNKWHFFSCRDRKYPTGAKSNRTTRAGYWKSTGKDRAIKL-NKR 106 79**************************.99***********5245555999**********************************.999 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrl 128 + g+kktLvf++gr p+g++t+W+mhey + 462915132 107 TLGTKKTLVFHEGRPPTGKRTEWIMHEYYI 136 **************************75 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.79E-59	4	158	IPR003441	NAC domain
PROSITE profile	PS51005	55.102	9	159	IPR003441	NAC domain
Pfam	PF02365	2.9E-25	10	135	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 478 aa Download sequence Send to blast
MEALLNMNLP PGFGFHPSDA ELISHYLKRK IHGQRIDYDI IPEVDIYKHE PWDLPSKCNL 60 PIEDNKWHFF SCRDRKYPTG AKSNRTTRAG YWKSTGKDRA IKLNKRTLGT KKTLVFHEGR 120 PPTGKRTEWI MHEYYIDENE CQGNPDMKDA FVLCRVTKRE DWEVGNRNPE PQPLNDADTS 180 VVIVEKQEDA AASDICVGEP NNVATPARAE LSNDVATPAS DELSNDVAMT GFIPLSPKTE 240 SELQTFLDNL VADISSGPYV DTGSADLSLI EQNAESLNLQ NPGSMAPKIE PDQGSPIEDD 300 IDIEDYLSPD LSFRIVDFSD AFAATQEHHI MGMDPDTLPN NFEGTNEELQ LNQGDFNGNL 360 LNENIDNGIT VRRRNAAASS ASSSSSNRRI RMQVGVNRMV TSNSETINQT IEYTGKSGRV 420 RSFKQSEETE SSENLSNQRG IKISFRSSAG FNILFACVCM IGFIAAILRG YYHSSISL

Sequence ? help Back to Top

Protein Sequence Length: 478 aa Download sequence Send to blast

MEALLNMNLP PGFGFHPSDA ELISHYLKRK IHGQRIDYDI IPEVDIYKHE PWDLPSKCNL  60
PIEDNKWHFF SCRDRKYPTG AKSNRTTRAG YWKSTGKDRA IKLNKRTLGT KKTLVFHEGR  120
PPTGKRTEWI MHEYYIDENE CQGNPDMKDA FVLCRVTKRE DWEVGNRNPE PQPLNDADTS  180
VVIVEKQEDA AASDICVGEP NNVATPARAE LSNDVATPAS DELSNDVAMT GFIPLSPKTE  240
SELQTFLDNL VADISSGPYV DTGSADLSLI EQNAESLNLQ NPGSMAPKIE PDQGSPIEDD  300
IDIEDYLSPD LSFRIVDFSD AFAATQEHHI MGMDPDTLPN NFEGTNEELQ LNQGDFNGNL  360
LNENIDNGIT VRRRNAAASS ASSSSSNRRI RMQVGVNRMV TSNSETINQT IEYTGKSGRV  420
RSFKQSEETE SSENLSNQRG IKISFRSSAG FNILFACVCM IGFIAAILRG YYHSSISL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	5e-46	2	163	8	173	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in stress response. {ECO:0000250\|UniProtKB:Q7F2L3}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462915132

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by salt and cold stresses. {ECO:0000269\|PubMed:18813954}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021312344.1	1e-170	NAC domain-containing protein 74
Swissprot	Q7GCL7	1e-133	NAC74_ORYSJ; NAC domain-containing protein 74
TrEMBL	A0A1B6Q2Q7	1e-169	A0A1B6Q2Q7_SORBI; Uncharacterized protein
STRING	GRMZM2G064541_P01	1e-168	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7560	38	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17260.1	1e-64	NAC domain containing protein 86

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]