PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462914403

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

FAR1

Protein Properties

Length: 590aa MW: 65778.7 Da PI: 8.8658

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462914403	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	23.7	1.6e-07	43	94	2	48
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.....t 48 fY Y+++vGF+ r+ ++++s +ge ++++f C + ++++ +k 462914403 43 FYYGYGERVGFKARTGSNRRSVGDGEKIMQRFLCWRGNYTNRGSKGkdsdeV 94 9**********************************98887776666333330 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	9.0E-5	43	93	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS51152	8.556	221	281	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 590 aa Download sequence Send to blast
GKWKVSKLVV EHNHELQVAP GEVSATVPAL GMEFDSVEDA KGFYYGYGER VGFKARTGSN 60 RRSVGDGEKI MQRFLCWRGN YTNRGSKGKD SDEVKELVEV DEGAATTSGK RKREPYKTRS 120 RKPVTKNSDV IEVENGPGMA DAGNEKGSRR GKSKKDLVEK DGEPVGMDMA HDGTADDEEE 180 DEGEGGEDGV DGEVQVVVKE KRGRGRPRKN VTDDDALQAR VLRELGLRAL QYDSDERKKI 240 LSKYLSKRQS RPASGRPTKI ASRQALAERR KRGDGGRFLA SEGHQPLQQP SERRSKRLER 300 QNLKIEEEKA ESKEDEIIEA EPDPETEVVA GPGGEPKVGM VFLNEDKAYE FYVNYAGTAG 360 FSVRKAKASE SIEAHTFLEN QYEQLLEQLE NEVSNSEPRR ATSKKNKNVE VRRQQQSSVD 420 ANKKKKGRQG LPEPEEMEIP LRVDPPTVSN DIPNHLRNPT NQFLAPSHIM QAPYVTQQFG 480 LGSLQGFPGM SPFGQNQHLG LFNNRLTYNH HLFIVVHKSP RPHLRTYNPC NSSAAILNWA 540 TKPRIKANTP FLSGIFCDVL LPHLTMASLL VPTPIFRTNI LGSIVVENGS

Sequence ? help Back to Top

Protein Sequence Length: 590 aa Download sequence Send to blast

GKWKVSKLVV EHNHELQVAP GEVSATVPAL GMEFDSVEDA KGFYYGYGER VGFKARTGSN  60
RRSVGDGEKI MQRFLCWRGN YTNRGSKGKD SDEVKELVEV DEGAATTSGK RKREPYKTRS  120
RKPVTKNSDV IEVENGPGMA DAGNEKGSRR GKSKKDLVEK DGEPVGMDMA HDGTADDEEE  180
DEGEGGEDGV DGEVQVVVKE KRGRGRPRKN VTDDDALQAR VLRELGLRAL QYDSDERKKI  240
LSKYLSKRQS RPASGRPTKI ASRQALAERR KRGDGGRFLA SEGHQPLQQP SERRSKRLER  300
QNLKIEEEKA ESKEDEIIEA EPDPETEVVA GPGGEPKVGM VFLNEDKAYE FYVNYAGTAG  360
FSVRKAKASE SIEAHTFLEN QYEQLLEQLE NEVSNSEPRR ATSKKNKNVE VRRQQQSSVD  420
ANKKKKGRQG LPEPEEMEIP LRVDPPTVSN DIPNHLRNPT NQFLAPSHIM QAPYVTQQFG  480
LGSLQGFPGM SPFGQNQHLG LFNNRLTYNH HLFIVVHKSP RPHLRTYNPC NSSAAILNWA  540
TKPRIKANTP FLSGIFCDVL LPHLTMASLL VPTPIFRTNI LGSIVVENGS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	148	155	RRGKSKKD
2	200	208	KRGRGRPRK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462914403

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004981561.4	1e-157	protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A1E5UM03	1e-155	A0A1E5UM03_9POAL; Uncharacterized protein
TrEMBL	A0A3L6TUH1	1e-153	A0A3L6TUH1_PANMI; Protein FAR1-RELATED SEQUENCE 5-like
STRING	OMERI03G32600.1	1e-176	(Oryza meridionalis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP14833	13	18

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18960.1	5e-09	FAR1-related sequence 12