PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462914309

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

FAR1

Protein Properties

Length: 535aa MW: 56491.4 Da PI: 7.098

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462914309	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	70.6	3.7e-22	2	86	20	91
FAR1 20 kkskrngeitkrtfvCskegkreeekkk.............tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 ++s+r+g++++r+fvC keg+r+ + k+ + + rrtra+tr+gCka+++vkk+++g+w vtkle+ HnH+l+p 462914309 2 HRSRRDGSVMSRQFVCAKEGFRTYRGKNevaradagtgdedSGRGRRTRAVTRVGCKAMIRVKKQDNGRWTVTKLETAHNHPLVP 86 6899*********************************999999***********************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.2E-20	2	86	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 535 aa Download sequence Send to blast
MHRSRRDGSV MSRQFVCAKE GFRTYRGKNE VARADAGTGD EDSGRGRRTR AVTRVGCKAM 60 IRVKKQDNGR WTVTKLETAH NHPLVPANQS HCLRPHKPLS ECGKQRPFGG HRNGGMPLAI 120 EPPVSALPAQ YFVKRWTKDA MDRSTSKKDD KNSRVQEPKD EQKSSAEDGV HSPSWRYNSL 180 SREALRFAEE GASSLEVYIV AMQALQEAAN RVNMAKRGIG QAAPLAVMPI AAQPPESFGQ 240 VHEISSGPSH LVAAAPVSLS TQYGQTSGAN RSVDNSASPA YVAVDKFSGF PEQNASAPSS 300 GNVEGRETKS TGAAAQIKES HELSQANGNS GCSVNALNSN AAPQLVTVPI GLCPSMDGSK 360 ISPAGMNSLN SGDVSSNSKV PLGLHPAQSS AQQPATHSQT KTPDSIDSQG NPEGSSIRAA 420 AIAAGARIAS ASDAASIIKA AQSKGAIHIK PGENLPNYLK PLTPKPLTSL PPVNTPNLEH 480 ASPSHMQPGK LNFGDSAAAK DAIFGSTDGS DDEYDDDNTD DDEDEGLTGD DAEHE

Sequence ? help Back to Top

Protein Sequence Length: 535 aa Download sequence Send to blast

MHRSRRDGSV MSRQFVCAKE GFRTYRGKNE VARADAGTGD EDSGRGRRTR AVTRVGCKAM  60
IRVKKQDNGR WTVTKLETAH NHPLVPANQS HCLRPHKPLS ECGKQRPFGG HRNGGMPLAI  120
EPPVSALPAQ YFVKRWTKDA MDRSTSKKDD KNSRVQEPKD EQKSSAEDGV HSPSWRYNSL  180
SREALRFAEE GASSLEVYIV AMQALQEAAN RVNMAKRGIG QAAPLAVMPI AAQPPESFGQ  240
VHEISSGPSH LVAAAPVSLS TQYGQTSGAN RSVDNSASPA YVAVDKFSGF PEQNASAPSS  300
GNVEGRETKS TGAAAQIKES HELSQANGNS GCSVNALNSN AAPQLVTVPI GLCPSMDGSK  360
ISPAGMNSLN SGDVSSNSKV PLGLHPAQSS AQQPATHSQT KTPDSIDSQG NPEGSSIRAA  420
AIAAGARIAS ASDAASIIKA AQSKGAIHIK PGENLPNYLK PLTPKPLTSL PPVNTPNLEH  480
ASPSHMQPGK LNFGDSAAAK DAIFGSTDGS DDEYDDDNTD DDEDEGLTGD DAEHE

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462914309

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025794566.1	0.0	protein FAR1-RELATED SEQUENCE 5-like isoform X2
TrEMBL	A0A0A9CZQ6	0.0	A0A0A9CZQ6_ARUDO; Uncharacterized protein
STRING	Si034021m	1e-176	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-15	FAR1-related sequence 5