PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462914186
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family NF-X1
Protein Properties Length: 823aa    MW: 89088.4 Da    PI: 8.0763
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462914186genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X120.41.1e-06165182118
   zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                CG+H+C+k CH+GpC+ C
  462914186 165 CGRHRCEKVCHTGPCGDC 182
                ****************99 PP
2zf-NF-X1186.3e-06229246118
   zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                CG+H C+  CH+GpC++C
  462914186 229 CGNHACKDMCHPGPCGEC 246
                ****************** PP
3zf-NF-X122.13.2e-07287304118
   zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                CG H+C+ +CHeG+CppC
  462914186 287 CGVHRCKVTCHEGECPPC 304
                ****************** PP
4zf-NF-X120.61e-06382400119
   zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                CG+H+Cq lCH G CppC 
  462914186 382 CGQHTCQLLCHSGHCPPCL 400
                ******************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004380.017110128IPR000967Zinc finger, NF-X1-type
PfamPF014226112127IPR000967Zinc finger, NF-X1-type
CDDcd060081.81E-11155203No hitNo description
PfamPF014221.8E-5165182IPR000967Zinc finger, NF-X1-type
SMARTSM004384.1E-4165184IPR000967Zinc finger, NF-X1-type
CDDcd060086.83E-8219262No hitNo description
PfamPF014227.9E-4229246IPR000967Zinc finger, NF-X1-type
SMARTSM004387.0E-4229248IPR000967Zinc finger, NF-X1-type
CDDcd060089.71E-11277324No hitNo description
PfamPF014224.2E-6287304IPR000967Zinc finger, NF-X1-type
SMARTSM004381.3E-4287306IPR000967Zinc finger, NF-X1-type
CDDcd060083.90E-8372424No hitNo description
PfamPF014221.8E-5382399IPR000967Zinc finger, NF-X1-type
SMARTSM004387.3E-5382401IPR000967Zinc finger, NF-X1-type
PfamPF0142246439455IPR000967Zinc finger, NF-X1-type
SMARTSM004380.34439457IPR000967Zinc finger, NF-X1-type
PfamPF014220.0018492507IPR000967Zinc finger, NF-X1-type
SMARTSM004380.044492527IPR000967Zinc finger, NF-X1-type
PfamPF014224529555IPR000967Zinc finger, NF-X1-type
SMARTSM004380.16536557IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009642Biological Processresponse to light intensity
GO:0009651Biological Processresponse to salt stress
GO:0009697Biological Processsalicylic acid biosynthetic process
GO:0010188Biological Processresponse to microbial phytotoxin
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042742Biological Processdefense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 823 aa     Download sequence    Send to blast
MVRRSAPVWS CGSCYSIFHL PCIRKWARSP ASVADGSAEA AASANWRCPG CQSVLSIPAR  60
DLSYTCFCGR RRDPPNDLFL TPHSCGEPCS KPLEKAEPGL KGDDAAATRC PHVCVLQCHP  120
GPCPPCKQFA PDQPCPCGKQ IIVRRCADRS TPVTCGRPCE RLLPCGRHRC EKVCHTGPCG  180
DCAVLISAKC FCGKKEETLL CGDMMVKGKL SEDDGVFSCS EVCGHTLACG NHACKDMCHP  240
GPCGECELMP GKVTTCHCGK TKLQETRASC LDPIPTCDKV CDKYLPCGVH RCKVTCHEGE  300
CPPCLVRVEQ RCRCSSSGRM VECYMVSKEE FLCNKPCGRK KNCGRHRCSE CCCPLSKPLA  360
NHEDGNWNPH LCQLPCGKKL RCGQHTCQLL CHSGHCPPCL ETIFSDLTCA CGRTSIPPPQ  420
PCGTPTPSCP HKCSVPQPCG HPASHSCHFG DCPPCVVPVV RECIGGHVML RNIPCGSKDI  480
RCNQPCGKNR QCGMHACART CHPAPCDQPP ANGDASSSSG GKASCGQVCG AARRECKHTC  540
TAPCHPSSPC PDSRCEFPVT ISCSCGRITA TVPCGAGGAS SGDNMFEVSI IQKLPMPLQP  600
VESNGRRVPL GQRKLSCDED CAKMEKKRVL AEAFDITPPN LDALHFGENS SSSDLVSDLF  660
RRDPKWVVAI EERCKFLVLG KMRGSSSSSL KLHVFCHMMK DKREAIRLIA DRWKLSVQSA  720
GWEPKRFVTI HVTPKSKPPA RILGSKAGAP VTAAHPYFDP LVDMDPRLVV AMLDLPRDAD  780
VNALVLRFGG ECELVWLNDK NAVAVFNDPA RAATALRRLE MPL
Functional Description ? help Back to Top
Source Description
UniProtMediates E2-dependent ubiquitination (By similarity). Confers resistance to osmotic stress such as high salinity. Promotes H(2)O(2) production. Negative regulator of some defense-related genes via an salicylic acid (SA)-dependent signaling pathway. Confers susceptibility to the compatible phytopathogen Pseudomonas syringae pv. tomato strain DC3000 (Pst DC3000). Mediates resistance to type A trichothecenes (phytotoxins produced by phytopathogenic fungi). {ECO:0000250, ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462914186
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By brassinosteroids, osmotic stress and high salinity. Accumulates in response to SA, ethylene, methyl jasmonate (MeJA), flagellin (e.g. flg22), and type A trichothecenes such as T-2 toxin and diacetoxyscirpenol (DAS), but not in response to type B trichothecenes such as deoxynivalenol (DON). {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004966863.20.0NF-X1-type zinc finger protein NFXL1
SwissprotQ9SY590.0NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1
TrEMBLA0A0E0HNJ40.0A0A0E0HNJ4_ORYNI; Uncharacterized protein
STRINGONIVA06G11110.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61303543
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10170.10.0NF-X-like 1