PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462914047
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family GRAS
Protein Properties Length: 353aa    MW: 37875.7 Da    PI: 7.8953
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462914047genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS704.5e-225315621123
       GRAS  21 qalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdi 119
                + +   + +las d   ++qRlaa+f+ ALa++l++ v++l++al +s++s+ + s +  a++  +++ P++k+++lt+N+aIlea+ege+ vH++D++ 
  462914047  53 EVAAGAITQLASLDSpHTLQRLAAVFADALARKLLNLVPGLSRALLMSSSSPASFSGAGEARRHVFDALPFMKLAYLTTNHAILEAMEGERFVHVVDLSG 152
                333445666666666679********************************************************************************87 PP

       GRAS 120 sqGl 123
                 +G+
  462914047 153 PYGG 156
                6653 PP
2GRAS56.94.4e-18216274223281
       GRAS 223 erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpresee 281
                +  ++L++vk lsP ++vv+e ea+hn++sF erf eal+yy++lfd+le + +++s+ 
  462914047 216 KLGSFLSAVKALSPAIMVVTEPEANHNAASFQERFDEALNYYASLFDCLERSSSSTSSS 274
                3678*********************************************9998877754 PP
3GRAS49.38.9e-16272345304374
       GRAS 304 errerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdg.yrveee..sgslvlgWkdrpLvsvSaWr 374
                ++ + h++ + W +r+e+aG++ v ls+  +++a+ ll+ +++ g y+v ++   + ++++W+++pL+s+SaWr
  462914047 272 SSSQHHQHRAAWARRMEAAGMERVGLSYGGMNEARKLLQSCGWGGsYEVVHDarGQGFFFCWHRKPLYSISAWR 345
                457889999*********************************55559999554367788**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098511.84817353IPR005202Transcription factor GRAS
PfamPF035141.6E-1953156IPR005202Transcription factor GRAS
PfamPF035141.5E-15216274IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MLQDDVVSSA TSSPASSSLY SPSAHGYGSW VQDLSQDQQS VRLVGLLYQC AAEVAAGAIT  60
QLASLDSPHT LQRLAAVFAD ALARKLLNLV PGLSRALLMS SSSPASFSGA GEARRHVFDA  120
LPFMKLAYLT TNHAILEAME GERFVHVVDL SGPYGGGGGS SCLTPLQIIA ARSASPRSFG  180
ELLERELNTR LQLSPSDSSS SVVLCSSPLS PRAAAKLGSF LSAVKALSPA IMVVTEPEAN  240
HNAASFQERF DEALNYYASL FDCLERSSSS TSSSQHHQHR AAWARRMEAA GMERVGLSYG  300
GMNEARKLLQ SCGWGGSYEV VHDARGQGFF FCWHRKPLYS ISAWRPAARR LNS
Cis-element ? help Back to Top
SourceLink
PlantRegMap462914047
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL9351545e-45AL935154.2 Oryza sativa chromosome 12, . BAC OSJNBb0109O08 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankAP0149685e-45AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
GenBankCP0126195e-45CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence.
GenBankFQ3779475e-45FQ377947.1 Oryza glaberrima chromosome 12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012703080.13e-85scarecrow-like protein 3
TrEMBLA0A3L6Q6302e-87A0A3L6Q630_PANMI; Uncharacterized protein
STRINGSi009933m6e-85(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2554245
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.12e-24scarecrow-like 3