PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462913803
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family ERF
Protein Properties Length: 434aa    MW: 48401.4 Da    PI: 5.4278
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462913803genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.47.4e-18175224255
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                +++G+r+++ +g+W+AeIrdp++     r++lg++ ++eeAa+a++  +++++g
  462913803 175 QFRGIRRRP-WGKWAAEIRDPRK---GVRVWLGTYNSPEEAARAYDVEARRIRG 224
                69*******.**********954...4************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.6E-30175233IPR001471AP2/ERF domain
CDDcd000184.10E-31175233No hitNo description
SMARTSM003806.1E-35175238IPR001471AP2/ERF domain
PROSITE profilePS5103223.762175232IPR001471AP2/ERF domain
SuperFamilySSF541711.83E-21175234IPR016177DNA-binding domain
PRINTSPR003671.5E-9176187IPR001471AP2/ERF domain
PfamPF008474.5E-11176224IPR001471AP2/ERF domain
PRINTSPR003671.5E-9198214IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
MYNNRHRGSR PLLSRTGTTT SKLPVQLTVT FPSRDVSSTL VVRIPTGQRR KAGEGRKRRP  60
RRGDDEELLK EESDEDFEAD FEEFEVESGQ SELESDDDVK PVAASRSGVA RENFICSKAQ  120
LFILRRCHSI YTTILRLSWS GEFLPIPFLA DGLNSTPAGA DGAAARSAKR KRKNQFRGIR  180
RRPWGKWAAE IRDPRKGVRV WLGTYNSPEE AARAYDVEAR RIRGKKAKVN FPDEVPVASE  240
KCRALPTSMK VPNLDTEEKP IIKPIVNNMT NSNAFSYPHV LVVQPQNMSF VPTANSVAPF  300
QEPFMNLSSD QGSNSFSCSD FRRENDTRTP DITSVLATIP TLTQDESAFL QNTSNAVAPP  360
VMENASVDPS DLEPYMDFLM DGGSDESINT LSSCDGCQDV LSNMDLWTFE DMPFLGGINI  420
LEMKCSCQVP LGAW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-201752391479Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1168182KRKRKNQFRGIRRRP
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional activator that may be involved in defense signaling pathway. Binds in vitro to the DNA sequence 5'-AGCCGCC-3' of the GCC-box element found in pathogenesis-related (PR) gene promoters. The transcriptional activation is enhanced in vitro by the presence of MPK12/BWMK1. {ECO:0000269|PubMed:12913152}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462913803
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015643752.11e-132ethylene-responsive transcription factor 1-like
SwissprotQ6K7E61e-106ERF1_ORYSJ; Ethylene-responsive transcription factor 1
TrEMBLA0A1E5UKA81e-138A0A1E5UKA8_9POAL; Ethylene-responsive transcription factor 1
STRINGPavir.Ia01229.1.p1e-138(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP103938134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72360.18e-30ERF family protein
Publications ? help Back to Top
  1. Kim CY, et al.
    Identification of rice blast fungal elicitor-responsive genes by differential display analysis.
    Mol. Plant Microbe Interact., 2000. 13(4): p. 470-4
    [PMID:10755311]
  2. Koo SC, et al.
    OsBWMK1 mediates SA-dependent defense responses by activating the transcription factor OsWRKY33.
    Biochem. Biophys. Res. Commun., 2009. 387(2): p. 365-70
    [PMID:19607808]
  3. Iwamoto M,Takano M
    Phytochrome-regulated EBL1 contributes to ACO1 upregulation in rice.
    Biotechnol. Lett., 2011. 33(1): p. 173-8
    [PMID:20872166]
  4. Serra TS, et al.
    OsRMC, a negative regulator of salt stress response in rice, is regulated by two AP2/ERF transcription factors.
    Plant Mol. Biol., 2013. 82(4-5): p. 439-55
    [PMID:23703395]
  5. Jisha V, et al.
    Overexpression of an AP2/ERF Type Transcription Factor OsEREBP1 Confers Biotic and Abiotic Stress Tolerance in Rice.
    PLoS ONE, 2015. 10(6): p. e0127831
    [PMID:26035591]
  6. Lourenço TF, et al.
    The Rice E3-Ubiquitin Ligase HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENE1 Modulates the Expression of ROOT MEANDER CURLING, a Gene Involved in Root Mechanosensing, through the Interaction with Two ETHYLENE-RESPONSE FACTOR Transcription Factors.
    Plant Physiol., 2015. 169(3): p. 2275-87
    [PMID:26381316]