PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 462913663 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 110aa MW: 12242.7 Da PI: 4.233 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 46 | 9.6e-15 | 7 | 88 | 12 | 94 |
HTT-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EE CS B3 12 ksgrlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvv 94 +sg l + k++a ++ +++++ +tl+l d g ++W + l +++gry+l++GW +F ++n+L+egD++vF+ ++ +++ l++ 462913663 7 ASGFLAMDKDYALKYLSEENGAITLSLPD--GsETWVISLD-INTDGRYTLSTGWLNFIHDNRLQEGDICVFQPSEGdKNTALTF 88 56778889999999976766765555555..5499*****3.566677*************************774436665655 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd10017 | 5.33E-12 | 1 | 81 | No hit | No description |
PROSITE profile | PS50863 | 12.379 | 1 | 94 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.3E-4 | 1 | 92 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 8.7E-15 | 4 | 84 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.39E-14 | 7 | 83 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 9.4E-12 | 8 | 88 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 110 aa Download sequence Send to blast |
MDKTTVASGF LAMDKDYALK YLSEENGAIT LSLPDGSETW VISLDINTDG RYTLSTGWLN 60 FIHDNRLQEG DICVFQPSEG DKNTALTFHP LEGSFRTEGK GYMGSIWNIL |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | 462913663 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_021321798.1 | 8e-34 | B3 domain-containing protein LOC_Os12g40080 | ||||
Swissprot | Q2QMT7 | 9e-30 | Y1214_ORYSJ; B3 domain-containing protein Os12g0591400 | ||||
TrEMBL | A0A0A9DH92 | 4e-35 | A0A0A9DH92_ARUDO; Uncharacterized protein | ||||
STRING | Sb08g019887.1 | 4e-32 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP562 | 34 | 179 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G49480.1 | 6e-08 | related to vernalization1 1 |