PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462913612
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family NF-YA
Protein Properties Length: 307aa    MW: 33477.3 Da    PI: 8.8379
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462913612genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA97.81.1e-30137193158
  CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                d+p+YVNaKQy++Il+RR +Rak+e+e+++  k+rkpylheSRh hA+rR+RgsgGrF
  462913612 137 DAPIYVNAKQYEGILRRRRARAKAERENRM-VKARKPYLHESRHLHAMRRARGSGGRF 193
                68****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005212.2E-34135196IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115236.889136196IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006162.1E-23139161IPR001289Nuclear transcription factor Y subunit A
PfamPF020454.6E-28139193IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860141161IPR018362CCAAT-binding factor, conserved site
PRINTSPR006162.1E-23170193IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MMSFKSHEGF GQGEPAPLSP EETRRDGQFQ VVPAAQGSPD PAPPSAKRAA PEVLKFSVFQ  60
GNSDSGSKGD KAPDHSTTIA LQSPLPEYNG RFEIGLGQSM VSPNYSGPDQ CYGLLTTYAM  120
RSMSGGRMLL PLNAAADAPI YVNAKQYEGI LRRRRARAKA ERENRMVKAR KPYLHESRHL  180
HAMRRARGSG GRFLNTKKED HGKETEASGG NKMATHALPF SYSPQLEPSN NQRHCHSRSS  240
GSSGLSGSEV SNMYEHDDAD HYNSSIEHLR TPFFTPLPSI MDGEHGAAAI PSFKWASSDG  300
CCELLKA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A4e-18137200265NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap462913612
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001149937.11e-125nuclear transcription factor Y subunit A-10
TrEMBLA0A0A9RWX31e-138A0A0A9RWX3_ARUDO; Uncharacterized protein
STRINGEMT110101e-128(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23073790
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06510.21e-25nuclear factor Y, subunit A10