PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462913466 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | ARF | ||||||||
Protein Properties | Length: 1180aa MW: 131990 Da PI: 6.7704 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 72.5 | 5.1e-23 | 164 | 265 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 f+k+lt sd++++g +++ +++a+e+ +++++ ++l+ +d++g +W++++i+r++++r++l++GW+ Fv++++L +gD ++F + +++el+ 462913466 164 FCKTLTASDTSTHGGFSVLRRHADEClppldmtQSPPT--QELVAKDLHGMEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFL--RGENGELR 259 99*****************************7555544..58************************************************..449999** PP EEEE-S CS B3 94 vkvfrk 99 v+v+r+ 462913466 260 VGVRRA 265 ***996 PP | |||||||
2 | Auxin_resp | 111.5 | 8.4e-37 | 290 | 371 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha++tks+F+v+Y+Pr+s+seF+++++++++++k+++s+GmRf+m+fe+e+++e+r++Gt+vg ++ldp Wp+S Wr Lk 462913466 290 AWHAINTKSMFTVYYKPRTSPSEFIIPYDQYMESVKNNYSIGMRFRMRFEGEEAPEQRFTGTIVGCENLDP-LWPESSWRYLK 371 89*********************************************************************.9*******996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.4E-40 | 156 | 279 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.57E-39 | 157 | 293 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 7.34E-21 | 162 | 264 | No hit | No description |
Pfam | PF02362 | 6.7E-21 | 164 | 265 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.928 | 164 | 266 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.8E-23 | 164 | 266 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 2.8E-33 | 290 | 371 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 4.6E-13 | 1043 | 1141 | IPR033389 | AUX/IAA domain |
SuperFamily | SSF54277 | 1.37E-12 | 1055 | 1133 | No hit | No description |
PROSITE profile | PS51745 | 24.892 | 1056 | 1149 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1180 aa Download sequence Send to blast |
MPPAAMAPPS TPQPSSNSVD PLYPELWRAC AGPLVTVPRP GDLVFYFPQG HIEQVPAAAC 60 CLHPLRLNLV CHVQAADLIF CCSVPLQVEA SMNQVAQNHM RLYELPSKLL CRVLNVELKA 120 EADTDEVYAQ IMLMPEPEQN EAGGAEKASS GSNATPPRPA VRSFCKTLTA SDTSTHGGFS 180 VLRRHADECL PPLDMTQSPP TQELVAKDLH GMEWRFRHIF RGQPRRHLLQ SGWSVFVSSK 240 RLVAGDAFIF LRGENGELRV GVRRAMRQLT NVPSSVISSQ SMHLGVLATA WHAINTKSMF 300 TVYYKPRTSP SEFIIPYDQY MESVKNNYSI GMRFRMRFEG EEAPEQRFTG TIVGCENLDP 360 LWPESSWRYL KVRWDEPSTI PRPDRVSPWK IEPASSPPVN PLPLSGGRVK RHRQNAPPPS 420 PESSVLTKEV TTKTDVDSAQ TQHQNSVLQG QEQMTLRNNL TESNDSDATV QKPMMWSPSP 480 NGKCHALTFQ QRPPTDNWMQ LGRRETDFKD SRSASQSFGD SQGLFMQPFD DNHKRLNAFN 540 NQFQDQGSAH RYADPYFFMP PQAPLTVESS ARMHAANNEL RFWNDQNGMY GNSSDPHSFR 600 FGQNPSNWLS QPFARVEQPR VVRPHASVAP FDLEKTREGS GFKIFGFKVD TTSASPIPMA 660 NMHEDQTHPS LSMNEVQPVQ TECLPEVSVS TAGTAAENEK SIQQGPQSSK DIQSKSQDRV 720 SPWKIEPASS PPVNPLPLSG GRVKRHRQNA PPTSPESSVL TKEVTTKPDV DSAQTQHQNS 780 VLQGQEQMTL RNNLTDSNDS DATVQKPMMW SPSPNGKSHA LTFQQRPPTD NWMQLGRRET 840 DFKDSRSASQ SFGDSQGLFM QPFDDNQKRL NAFNNQFQDQ GSAHRYADPY FFMPPQAALN 900 VESSTRMHAA NNELRFWNNQ NGMYGNSSDP QGFRFGQNPS SWLSQPFARV EQPRVVRPHA 960 SVAPFDLEKT REGSGFKIFG FKVDAISASP TPMPTTLEDQ THPSLSMNEG QPVQTECLPE 1020 VSVSTAGTAT ENEKSVQQGP QGSKDIQSKS QGASARSCTK VHKQGVALGR SVDLSKFNDY 1080 DELKAELDNM FEFEGELVSA NKNWQIVYTD NEGDMMLVGD DPWEEFCSIV RKIYIYTKEE 1140 VQKMNSKSTL RKEEPLAVGE GCCVKRTIYK ELQLCRVPAK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-155 | 10 | 396 | 7 | 357 | Auxin response factor 1 |
4ldw_A | 1e-155 | 10 | 396 | 7 | 357 | Auxin response factor 1 |
4ldw_B | 1e-155 | 10 | 396 | 7 | 357 | Auxin response factor 1 |
4ldx_A | 1e-155 | 10 | 396 | 7 | 357 | Auxin response factor 1 |
4ldx_B | 1e-155 | 10 | 396 | 7 | 357 | Auxin response factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462913466 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004971147.1 | 0.0 | auxin response factor 4 isoform X1 | ||||
Swissprot | Q5JK20 | 0.0 | ARFD_ORYSJ; Auxin response factor 4 | ||||
TrEMBL | K3XEM3 | 0.0 | K3XEM3_SETIT; Auxin response factor | ||||
STRING | Si000340m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1178 | 36 | 111 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62000.3 | 0.0 | auxin response factor 2 |
Publications ? help Back to Top | |||
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