PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462913466
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family ARF
Protein Properties Length: 1180aa    MW: 131990 Da    PI: 6.7704
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462913466genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.55.1e-23164265199
                EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                f+k+lt sd++++g +++ +++a+e+       +++++  ++l+ +d++g +W++++i+r++++r++l++GW+ Fv++++L +gD ++F   + +++el+
  462913466 164 FCKTLTASDTSTHGGFSVLRRHADEClppldmtQSPPT--QELVAKDLHGMEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFL--RGENGELR 259
                99*****************************7555544..58************************************************..449999** PP

                EEEE-S CS
         B3  94 vkvfrk 99 
                v+v+r+
  462913466 260 VGVRRA 265
                ***996 PP

2Auxin_resp111.58.4e-37290371183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 a+ha++tks+F+v+Y+Pr+s+seF+++++++++++k+++s+GmRf+m+fe+e+++e+r++Gt+vg ++ldp  Wp+S Wr Lk
   462913466 290 AWHAINTKSMFTVYYKPRTSPSEFIIPYDQYMESVKNNYSIGMRFRMRFEGEEAPEQRFTGTIVGCENLDP-LWPESSWRYLK 371
                 89*********************************************************************.9*******996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.4E-40156279IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.57E-39157293IPR015300DNA-binding pseudobarrel domain
CDDcd100177.34E-21162264No hitNo description
PfamPF023626.7E-21164265IPR003340B3 DNA binding domain
PROSITE profilePS5086311.928164266IPR003340B3 DNA binding domain
SMARTSM010191.8E-23164266IPR003340B3 DNA binding domain
PfamPF065072.8E-33290371IPR010525Auxin response factor
PfamPF023094.6E-1310431141IPR033389AUX/IAA domain
SuperFamilySSF542771.37E-1210551133No hitNo description
PROSITE profilePS5174524.89210561149IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1180 aa     Download sequence    Send to blast
MPPAAMAPPS TPQPSSNSVD PLYPELWRAC AGPLVTVPRP GDLVFYFPQG HIEQVPAAAC  60
CLHPLRLNLV CHVQAADLIF CCSVPLQVEA SMNQVAQNHM RLYELPSKLL CRVLNVELKA  120
EADTDEVYAQ IMLMPEPEQN EAGGAEKASS GSNATPPRPA VRSFCKTLTA SDTSTHGGFS  180
VLRRHADECL PPLDMTQSPP TQELVAKDLH GMEWRFRHIF RGQPRRHLLQ SGWSVFVSSK  240
RLVAGDAFIF LRGENGELRV GVRRAMRQLT NVPSSVISSQ SMHLGVLATA WHAINTKSMF  300
TVYYKPRTSP SEFIIPYDQY MESVKNNYSI GMRFRMRFEG EEAPEQRFTG TIVGCENLDP  360
LWPESSWRYL KVRWDEPSTI PRPDRVSPWK IEPASSPPVN PLPLSGGRVK RHRQNAPPPS  420
PESSVLTKEV TTKTDVDSAQ TQHQNSVLQG QEQMTLRNNL TESNDSDATV QKPMMWSPSP  480
NGKCHALTFQ QRPPTDNWMQ LGRRETDFKD SRSASQSFGD SQGLFMQPFD DNHKRLNAFN  540
NQFQDQGSAH RYADPYFFMP PQAPLTVESS ARMHAANNEL RFWNDQNGMY GNSSDPHSFR  600
FGQNPSNWLS QPFARVEQPR VVRPHASVAP FDLEKTREGS GFKIFGFKVD TTSASPIPMA  660
NMHEDQTHPS LSMNEVQPVQ TECLPEVSVS TAGTAAENEK SIQQGPQSSK DIQSKSQDRV  720
SPWKIEPASS PPVNPLPLSG GRVKRHRQNA PPTSPESSVL TKEVTTKPDV DSAQTQHQNS  780
VLQGQEQMTL RNNLTDSNDS DATVQKPMMW SPSPNGKSHA LTFQQRPPTD NWMQLGRRET  840
DFKDSRSASQ SFGDSQGLFM QPFDDNQKRL NAFNNQFQDQ GSAHRYADPY FFMPPQAALN  900
VESSTRMHAA NNELRFWNNQ NGMYGNSSDP QGFRFGQNPS SWLSQPFARV EQPRVVRPHA  960
SVAPFDLEKT REGSGFKIFG FKVDAISASP TPMPTTLEDQ THPSLSMNEG QPVQTECLPE  1020
VSVSTAGTAT ENEKSVQQGP QGSKDIQSKS QGASARSCTK VHKQGVALGR SVDLSKFNDY  1080
DELKAELDNM FEFEGELVSA NKNWQIVYTD NEGDMMLVGD DPWEEFCSIV RKIYIYTKEE  1140
VQKMNSKSTL RKEEPLAVGE GCCVKRTIYK ELQLCRVPAK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-155103967357Auxin response factor 1
4ldw_A1e-155103967357Auxin response factor 1
4ldw_B1e-155103967357Auxin response factor 1
4ldx_A1e-155103967357Auxin response factor 1
4ldx_B1e-155103967357Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMap462913466
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004971147.10.0auxin response factor 4 isoform X1
SwissprotQ5JK200.0ARFD_ORYSJ; Auxin response factor 4
TrEMBLK3XEM30.0K3XEM3_SETIT; Auxin response factor
STRINGSi000340m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP117836111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.30.0auxin response factor 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Song X, et al.
    Rice RNA-dependent RNA polymerase 6 acts in small RNA biogenesis and spikelet development.
    Plant J., 2012. 71(3): p. 378-89
    [PMID:22443269]
  3. Kishimoto N, et al.
    Identification of the duplicated segments in rice chromosomes 1 and 5 by linkage analysis of cDNA markers of known functions.
    Theor. Appl. Genet., 1994. 88(6-7): p. 722-6
    [PMID:24186168]