PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462913311
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family ERF
Protein Properties Length: 299aa    MW: 32261.2 Da    PI: 6.7012
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462913311genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.81.1e-17151199556
        AP2   5 GVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                GVr ++ +g+++AeIrd + ng   r+++g+f+t+e Aa a+++a+ +++ge
  462913311 151 GVRKRP-WGKYAAEIRDSTRNG--ERVWIGTFDTPEAAALAYDQAAYSMRGE 199
                9*****.**********44465..**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103221.035148206IPR001471AP2/ERF domain
PRINTSPR003672.9E-7149160IPR001471AP2/ERF domain
SuperFamilySSF541715.95E-21150208IPR016177DNA-binding domain
SMARTSM003802.2E-30151212IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-27151207IPR001471AP2/ERF domain
CDDcd000182.95E-14151207No hitNo description
PfamPF008471.7E-12151199IPR001471AP2/ERF domain
PRINTSPR003672.9E-7172188IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MEPHFSNSYY YGNAVSADYS AASFQPSAHH SMGDNHQSSY TAWPVSPSSS LSPSHHHYYQ  60
QQLHFGGGTD DYYSCKEATM DQFGALRGPA SISRSSSGGS SSASTTYAPA AACWTTDAFT  120
VSQYSSPPTA THAGVIDDGP TNHQQDAPLI GVRKRPWGKY AAEIRDSTRN GERVWIGTFD  180
TPEAAALAYD QAAYSMRGEA AVLNFPVERV QESVRALGLG GGDSSSSNSP VLALKRRHCM  240
RKRTPKSKKA TSEEQTRTIS HGEHGKQKQA ASSSSSSCVL ELEDLGPDYL EELLALSYQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-271512081774Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap462913311
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7278833e-77KJ727883.1 Zea mays clone pUT5976 AP2-EREBP transcription factor (EREB166) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004959050.15e-81ethylene-responsive transcription factor 1
TrEMBLC5XCK52e-80C5XCK5_SORBI; Uncharacterized protein
STRINGSb02g005840.13e-81(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27737249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.14e-34ethylene response factor 1