PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462913088 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | NAC | ||||||||
Protein Properties | Length: 254aa MW: 28128.3 Da PI: 8.2146 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 89.9 | 4.6e-28 | 26 | 102 | 53 | 128 |
NAM 53 aeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 a+ek+wyfF+ r +ky+++ r+nr+t sg+Wkatg dk++++ +ge +glkk+Lv+y+g+a +g+ktdW+mhe+rl 462913088 26 AGEKDWYFFCLRGRKYRNSIRPNRVTGSGFWKATGIDKPIHDGaGGECIGLKKSLVYYRGSAGRGTKTDWMMHEFRL 102 4788*************************************9878889***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 35.044 | 1 | 126 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.1E-13 | 25 | 102 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.02E-32 | 26 | 126 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MEEKKPLVRT KESSGTGEAR HVVQGAGEKD WYFFCLRGRK YRNSIRPNRV TGSGFWKATG 60 IDKPIHDGAG GECIGLKKSL VYYRGSAGRG TKTDWMMHEF RLPSTSSTAA GVQDAEIWTI 120 CRIFKRNMSC NRSHQQQQLD YYYGYRYQNH QQQHYTGGGA SMASSFESTT TDTSEAHATD 180 HDQPFLLHGF LDASPADVTA TTTMKTSATI GSSQLLSSSV SGWSELTSLA RGGGSSWDEL 240 GRILEMSTDM PYCL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-30 | 27 | 132 | 69 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-30 | 27 | 132 | 69 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-30 | 27 | 132 | 69 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-30 | 27 | 132 | 69 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-30 | 27 | 132 | 72 | 174 | NAC domain-containing protein 19 |
3swm_B | 2e-30 | 27 | 132 | 72 | 174 | NAC domain-containing protein 19 |
3swm_C | 2e-30 | 27 | 132 | 72 | 174 | NAC domain-containing protein 19 |
3swm_D | 2e-30 | 27 | 132 | 72 | 174 | NAC domain-containing protein 19 |
3swp_A | 2e-30 | 27 | 132 | 72 | 174 | NAC domain-containing protein 19 |
3swp_B | 2e-30 | 27 | 132 | 72 | 174 | NAC domain-containing protein 19 |
3swp_C | 2e-30 | 27 | 132 | 72 | 174 | NAC domain-containing protein 19 |
3swp_D | 2e-30 | 27 | 132 | 72 | 174 | NAC domain-containing protein 19 |
4dul_A | 1e-30 | 27 | 132 | 69 | 171 | NAC domain-containing protein 19 |
4dul_B | 1e-30 | 27 | 132 | 69 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462913088 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP003829 | 2e-49 | AP003829.2 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1417_E01. | |||
GenBank | AP004314 | 2e-49 | AP004314.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0495H05. | |||
GenBank | AP014963 | 2e-49 | AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012615 | 2e-49 | CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025809001.1 | 1e-92 | transcription factor JUNGBRUNNEN 1-like | ||||
TrEMBL | A0A3L6T553 | 5e-96 | A0A3L6T553_PANMI; Transcription factor JUNGBRUNNEN 1-like | ||||
STRING | Pavir.Ca02638.1.p | 9e-91 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1191 | 38 | 129 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43000.1 | 4e-56 | NAC domain containing protein 42 |