PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462912961 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | bHLH | ||||||||
Protein Properties | Length: 397aa MW: 43891.2 Da PI: 6.1981 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 28.3 | 3.1e-09 | 217 | 246 | 1 | 30 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC CS HLH 1 rrrahnerErrRRdriNsafeeLrellPka 30 +r++h ++Er+RR+++N+ + Lr+l+P + 462912961 217 QRMTHIAVERNRRRQMNEYLRILRSLMPGS 246 79**************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 9.08E-7 | 215 | 256 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.7E-7 | 215 | 247 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 10.455 | 216 | 270 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.78E-8 | 216 | 247 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.3E-6 | 217 | 246 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 397 aa Download sequence Send to blast |
MGRQDALSAD TKTPCHPDAR TRGSTPYFDV AGPGKARRVR VGVAHLRPSC GEQGSHHGHL 60 DSFAPLDGAP EEQQPTGGSG AEMVDYMLGQ AASQPTTGQS QQVSSFDKLS FSDVLQFADF 120 GPKLALNQRA AAAASSDRDD DDDDDGYFFR FHSLPPSLQQ QQQHVEQEGS KTTADGQGIS 180 ESTTLVQQAE KEQQQQGKSG RRKRPRTVKT SEEVESQRMT HIAVERNRRR QMNEYLRILR 240 SLMPGSYVQR ILDLDVGGGV REEVAENKSC LADIEVRALG ADAMIKILSR RRPGQLIRTI 300 AALEEMQMSI LHTNITTIEQ TVLYSEEVAE NKSCLADIEV RALGADAMIK ILSRRRPGQL 360 IRTIAALEEM QMSILHTNIT TIDQTVLYSF NVKLTEQ |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 217 | 228 | RMTHIAVERNRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator (PubMed:17088607, PubMed:17183265, PubMed:17183267). Together with MYB88 and MYB124, ensures that stomata contain just two guard cells (GCs) by enforcing a single symmetric precursor cell division before stomatal maturity (PubMed:24571519). Together with SPCH and MUTE, regulates the stomata formation. Required to promote differentiation and morphogenesis of stomatal guard cells and to halt proliferative divisions in their immediate precursors. Mediates the formation of stomata (PubMed:17088607, PubMed:17183265, PubMed:17183267). Prevents histone H3K27me3 marks and derepresses stem cell gene expression (PubMed:24654956). {ECO:0000269|PubMed:17088607, ECO:0000269|PubMed:17183265, ECO:0000269|PubMed:17183267, ECO:0000269|PubMed:24571519, ECO:0000269|PubMed:24654956}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462912961 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Inhibited by low relative humidity (LRH) via epigenetic CG methylation, thus leading to a reduced stomatal index. {ECO:0000269|PubMed:22442411}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ727750 | 2e-69 | KJ727750.1 Zea mays clone pUT5691 bHLH transcription factor (bHLH22) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025805324.1 | 1e-113 | transcription factor FAMA isoform X1 | ||||
Swissprot | Q56YJ8 | 4e-75 | FAMA_ARATH; Transcription factor FAMA | ||||
TrEMBL | A0A2S3H9I3 | 1e-111 | A0A2S3H9I3_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A2T7E9Q9 | 1e-111 | A0A2T7E9Q9_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J03740.1.p | 1e-119 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9502 | 33 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24140.1 | 6e-62 | bHLH family protein |