PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462912854
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family HSF
Protein Properties Length: 204aa    MW: 22493.3 Da    PI: 7.8332
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462912854genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind107.78.9e-34171082102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   F+ k+y++++d++++ +i w +++nsfvv d+  f++++Lp +Fkhsnf+SFvRQLn+YgF+kv+ ++         weF+h  F +g+++ll++i 
     462912854  17 FVAKTYRMVDDPATDAVIAWGADNNSFVVADPFVFSQTLLPAHFKHSNFSSFVRQLNTYGFRKVDPDR---------WEFAHVAFLRGQTHLLRQIV 104
                   9****************************************************************999.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r++s
     462912854 105 RRSS 108
                   **97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.3E-3713106IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.2E-5213106IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467853.4E-3313106IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000562.7E-181740IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.1E-2917106IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.7E-185567IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405680IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.7E-186880IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MTSGGVVVDA APGVAPFVAK TYRMVDDPAT DAVIAWGADN NSFVVADPFV FSQTLLPAHF  60
KHSNFSSFVR QLNTYGFRKV DPDRWEFAHV AFLRGQTHLL RQIVRRSSGN GKRKDDDAAG  120
DIDADGAASV AMEVVRLRRE QRAIEDRVAA MWRRVQETER RPKQMLAFLV KVAGDPQNDV  180
GFGAAEAGYM PPPYAFPVDS TSGY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B6e-25410610129Heat shock factor protein 1
5d5v_B6e-25410610129Heat shock factor protein 1
5d5v_D6e-25410610129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462912854
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9766691e-155EU976669.1 Zea mays clone 986698 heat shock factor protein 1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001152657.16e-99heat shock factor protein 1
SwissprotQ6EUG45e-91HFC2A_ORYSJ; Heat stress transcription factor C-2a
TrEMBLA0A0A9F8Q01e-100A0A0A9F8Q0_ARUDO; Uncharacterized protein
STRINGGRMZM2G105348_P018e-99(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44713470
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.12e-57heat shock transcription factor C1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]