PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462912801 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | MYB_related | ||||||||
Protein Properties | Length: 209aa MW: 22388.8 Da PI: 7.9419 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 41.1 | 4e-13 | 14 | 61 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg..tWktIartmgkgRtlkqcksrwqk 46 rg+W++eEd +l + +++Ggg +W + +r+ g++Rt++ +k++w++ 462912801 14 RGPWSAEEDARLRSYMERHGGGggSWLALPRKAGLRRTDNGVKNYWNT 61 89********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 9.7E-17 | 5 | 67 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.574 | 9 | 67 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.33E-11 | 9 | 70 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.7E-7 | 13 | 65 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.9E-10 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 9.97E-6 | 16 | 63 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 209 aa Download sequence Send to blast |
MGRSPCCDKS AVKRGPWSAE EDARLRSYME RHGGGGGSWL ALPRKAGLRR TDNGVKNYWN 60 TRLKKKLFAG GGRRRGYRHD EATNAGNVDD AAPLLPLPPP PCWSSQPYAY GAMGCAGDVG 120 DHMHVGAGGV FTGMIASTNE AAAVHQSAST CYSSEPAATE LDEIFRSTGP SGGEHSDLSR 180 SSNKDMEALN WNHHIQQGES VLQNHLGVP |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 63 | 74 | KKKLFAGGGRRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462912801 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004964229.2 | 1e-54 | transcription factor RAX1 | ||||
TrEMBL | A0A368QNY5 | 3e-53 | A0A368QNY5_SETIT; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP135 | 38 | 412 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37780.1 | 2e-23 | myb domain protein 87 |