PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462912293 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | AP2 | ||||||||
Protein Properties | Length: 223aa MW: 25166.6 Da PI: 9.6056 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 51.9 | 1.9e-16 | 70 | 129 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+++GV++++++gr++A+++d s+n k+ k+++lg ++ +e Aa+a++ a++k++g 462912293 70 SRFRGVSRHRWTGRFEAHLWDkNSWNPtqrKKgKQVYLGAYDEEEAAARAYDLAALKYWG 129 789******************888855666447*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 3.86E-17 | 70 | 138 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 6.2E-13 | 70 | 129 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.1E-24 | 71 | 143 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.809 | 71 | 137 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.4E-16 | 71 | 138 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 223 aa Download sequence Send to blast |
MENMVMVKNE IENFSGSAPA VMINASEGGE ASQVVRGRRR EPALLAPISG GANSSGIGKP 60 LPSITVKRSS RFRGVSRHRW TGRFEAHLWD KNSWNPTQRK KGKQVYLGAY DEEEAAARAY 120 DLAALKYWGP TTYTNFPVMD YEKELKIMEN LTKEEYLASL RSYLKPDKYI LMTERAAVFQ 180 EACPSTEVLP DNGQMFQAPS KWKMGSENWE GFRKQVSLSG NLQ |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 95 | 103 | PTQRKKGKQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462912293 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY685112 | 5e-81 | AY685112.1 Oryza sativa (japonica cultivar-group) transcription factor AP2D4 (AP2D4) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004961382.1 | 3e-86 | ethylene-responsive transcription factor WRI1 | ||||
TrEMBL | A0A1E5WDW3 | 9e-90 | A0A1E5WDW3_9POAL; Ethylene-responsive transcription factor WRI1 | ||||
STRING | Si022186m | 1e-85 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP51171 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41710.2 | 7e-37 | AP2 family protein |