PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462912031
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family MYB
Protein Properties Length: 276aa    MW: 30028.8 Da    PI: 9.431
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462912031genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.22.9e-1659104147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg W + Ed +l ++v+++G+ +W++Ia+++  gR++k+c++rw++ 
        462912031  59 RGHWRPAEDAKLRELVALYGPQNWNLIAEKLD-GRSGKSCRLRWFNQ 104
                      899*****************************.***********996 PP
2Myb_DNA-binding52.89.3e-17112154246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       +++ eE+e+l  a++ +G++ W+ Iar ++ gRt++ +k++w+ 
        462912031 112 RPFSDEEEERLMAAHRFYGNK-WAMIARLFP-GRTDNAVKNHWHV 154
                      68*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.95554105IPR017930Myb domain
SMARTSM007176.1E-1458107IPR001005SANT/Myb domain
SuperFamilySSF466895.62E-2859152IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.6E-2660112IPR009057Homeodomain-like
PfamPF139215.7E-1662122No hitNo description
CDDcd001671.27E-1362103No hitNo description
PROSITE profilePS5129424.91106160IPR017930Myb domain
SMARTSM007174.9E-13110158IPR001005SANT/Myb domain
CDDcd001673.76E-11113153No hitNo description
Gene3DG3DSA:1.10.10.602.9E-20113159IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MPCSSPPPPW LLRVGSAAAA AADQPASSSS SSKGGGRVVT ATMDTGEHQQ ESSSSGGARG  60
HWRPAEDAKL RELVALYGPQ NWNLIAEKLD GRSGKSCRLR WFNQLDPRIS KRPFSDEEEE  120
RLMAAHRFYG NKWAMIARLF PGRTDNAVKN HWHVIMARKY REQSTAYRRR KLNQAVQRKL  180
DAASAGSDVA AAVAVAGSHH HFLDAACGFG VVGDPYAGFG TTLRHYCGFP FPGGADEPPP  240
MPPAPFCLFP GEHSPLLNPP LQYLPGRVAA DNDMRA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-32581596107B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00222DAPTransfer from AT1G69560Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap462912031
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0419831e-158BT041983.1 Zea mays full-length cDNA clone ZM_BFb0095C08 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001354272.11e-108uncharacterized protein LOC100273887
TrEMBLA0A0E0LV691e-109A0A0E0LV69_ORYPU; Uncharacterized protein
STRINGOPUNC08G13850.21e-109(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29438260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.11e-71myb domain protein 105