PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462911983 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | NAC | ||||||||
Protein Properties | Length: 172aa MW: 18355 Da PI: 10.4662 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 124 | 1.3e-38 | 24 | 141 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..kge 98 lppGfrFhPtdeelvv+yLkkk+++ +l++ ++i+evd+yk++Pw+Lp +++ ++ ++ +a++sgyWkatg+dk+++++ ++e 462911983 24 LPPGFRFHPTDEELVVHYLKKKAASLPLPV-TIIAEVDLYKFDPWELPGELR--GARVVLLQPAGP---------QAATSGYWKATGTDKPIMASsgGRE 111 79****************************.89***************6553..344444444333.........34568*************9988888 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrl 128 +vg+kk Lvfy+g+ pkg kt+W+mheyrl 462911983 112 KVGVKKALVFYRGKPPKGLKTNWIMHEYRL 141 9***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 7.72E-45 | 20 | 147 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 42.012 | 24 | 172 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.5E-22 | 25 | 141 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 172 aa Download sequence Send to blast |
MRSMESTDSS SGSHQKPPGP APHLPPGFRF HPTDEELVVH YLKKKAASLP LPVTIIAEVD 60 LYKFDPWELP GELRGARVVL LQPAGPQAAT SGYWKATGTD KPIMASSGGR EKVGVKKALV 120 FYRGKPPKGL KTNWIMHEYR LTDAASSANT NTSRPPPGAG AGGGSSKVAS LR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 5e-43 | 23 | 141 | 14 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor of the NAC family associated with male fertility. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462911983 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ869677 | 1e-68 | DQ869677.1 Aegilops tauschii NAC transcription factor NAM-D2 (NAM-D2) gene, partial cds. | |||
GenBank | HQ630373 | 1e-68 | HQ630373.1 Triticum aestivum cultivar Triticale 76 NAC3 gene, complete cds. | |||
GenBank | HQ872051 | 1e-68 | HQ872051.1 Triticum aestivum cultivar Shaan253 NAC transcription factor (NAC4) gene, partial cds. | |||
GenBank | KM820890 | 1e-68 | KM820890.1 Triticum aestivum cultivar Chinese Spring NAC transcription factor NAM-D2 (NAM-D2) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002463039.1 | 1e-76 | NAC transcription factor NAM-B2 | ||||
Swissprot | A2YMR0 | 5e-72 | NAC10_ORYSI; NAC transcription factor ONAC010 | ||||
TrEMBL | C5XBN1 | 3e-75 | C5XBN1_SORBI; Uncharacterized protein | ||||
STRING | Sb02g036620.1 | 5e-76 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8233 | 30 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15510.1 | 4e-54 | NAC domain containing protein 2 |