PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 462911770 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 327aa MW: 36145.9 Da PI: 9.2113 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 55.4 | 1.1e-17 | 136 | 182 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P++ K +Ka+iL A+eY+ksLq 462911770 136 VHNLSERRRRDRINEKMRALQELVPHC-----NKTDKASILDDAIEYLKSLQ 182 6*************************8.....6******************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 7.77E-18 | 126 | 186 | No hit | No description |
SuperFamily | SSF47459 | 2.62E-21 | 130 | 193 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 18.571 | 132 | 181 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.0E-15 | 136 | 182 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.8E-21 | 136 | 190 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.5E-19 | 138 | 187 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 327 aa Download sequence Send to blast |
MLDYHYFALS PNVLCTEAQN KPRQPTSVNL LRTQFCSDHH RWFLLHQVAE LYKKRPCGAR 60 PAPSQKRPLP LRVDDAIDDA ALPLPGASTS GSSALLKRGR NEFDSRSEDA DFDAVDEARP 120 SRRPASSKRR TRAAEVHNLS ERRRRDRINE KMRALQELVP HCNKTDKASI LDDAIEYLKS 180 LQVQVQVMWM TTGVAPIMLP GAHQLMTPMG MGLNSSSMPP TTQLLSQMQR VPPFMNNLFP 240 NQMPQVPSAA TNVPNVANKV QNNRTAEPRN PFLQPNDTLA AAPQLPNLFG YGSQMSQQND 300 IQELLAGSSA PAFGAEPPSS SDGTGTT |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 127 | 144 | KRRTRAAEVHNLSERRRR |
2 | 140 | 145 | ERRRRD |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor that may act as negative regulator of phyB-dependent light signal transduction (PubMed:17485859). Transcription activator that acts as positive regulator of internode elongation. May function via regulation of cell wall-related genes. May play a role in a drought-associated growth-restriction mechanism in response to drought stress (PubMed:22984180). {ECO:0000269|PubMed:17485859, ECO:0000269|PubMed:22984180}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | 462911770 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by light in dark-grown etiolated seedlings (PubMed:17485859). Circadian oscillation under 12 h light/12 h dark cycle conditions, with peaks in the middle of the light period (PubMed:17485859, PubMed:22984180). Down-regulated by cold and drought stresses (PubMed:22984180). {ECO:0000269|PubMed:17485859, ECO:0000269|PubMed:22984180}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004955437.1 | 1e-129 | transcription factor PIF4 | ||||
Swissprot | Q10CH5 | 5e-85 | PIL13_ORYSJ; Transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13 | ||||
TrEMBL | A0A2T7EKQ1 | 1e-129 | A0A2T7EKQ1_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ba03888.1.p | 1e-128 | (Panicum virgatum) | ||||
STRING | Si030028m | 1e-129 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3174 | 34 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G09530.2 | 8e-30 | phytochrome interacting factor 3 |
Publications ? help Back to Top | |||
---|---|---|---|
|