PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462911719 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | MYB | ||||||||
Protein Properties | Length: 216aa MW: 24435.7 Da PI: 8.8231 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 45 | 2.5e-14 | 18 | 75 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..........TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg..........kgRtlkqcksrwqkyl 48 +g W++eEde+l++ + ++G g+W+++++ g + R++k+c++rw +yl 462911719 18 KGLWSPEEDEKLYNHIIRYGVGCWSSVPKLAGmhaftsmcsrLQRCGKSCRLRWINYL 75 678*****************************************************97 PP | |||||||
2 | Myb_DNA-binding | 49.2 | 1.2e-15 | 81 | 125 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+++++E++ +v +++ lG++ W+ Ia++++ gRt++++k++w++ 462911719 81 RGSFSQQEEDAIVGLHEILGNR-WSQIASHLP-GRTDNEIKNFWNTC 125 899*******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.1E-21 | 13 | 78 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 13.41 | 13 | 75 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.61E-27 | 16 | 122 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.4E-10 | 17 | 77 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.5E-13 | 18 | 75 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.52E-10 | 21 | 75 | No hit | No description |
PROSITE profile | PS51294 | 24.714 | 76 | 130 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.9E-26 | 79 | 130 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.0E-14 | 80 | 128 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.6E-14 | 81 | 125 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.01E-10 | 83 | 124 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 216 aa Download sequence Send to blast |
MGRHPASSGG GVQQKLRKGL WSPEEDEKLY NHIIRYGVGC WSSVPKLAGM HAFTSMCSRL 60 QRCGKSCRLR WINYLRPDLK RGSFSQQEED AIVGLHEILG NRWSQIASHL PGRTDNEIKN 120 FWNTCLKKKL RQRGIDPSTH KPISAAAATS EDQKQPADGG FIALKQQQQQ QIDGYGEALE 180 HKFLLPCHGQ QEQSMPHFDF DISRGAVVGE FNLEFF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 7e-27 | 16 | 130 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 125 | 131 | LKKKLRQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Possible transcription activator in response to an external signal. May be involved in the regulation of flavonoid biosynthesis. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462911719 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK111782 | 1e-112 | AK111782.1 Oryza sativa Japonica Group cDNA clone:J023084H22, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003569634.1 | 1e-92 | myb-related protein Hv33 | ||||
Swissprot | P20027 | 1e-74 | MYB3_HORVU; Myb-related protein Hv33 | ||||
TrEMBL | F2E8R0 | 5e-92 | F2E8R0_HORVV; Predicted protein | ||||
STRING | BRADI2G47590.1 | 6e-92 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2327 | 33 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26660.1 | 3e-71 | myb domain protein 86 |