PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462911167
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family GATA
Protein Properties Length: 391aa    MW: 41609.3 Da    PI: 4.1352
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462911167genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA51.81.1e-16286322135
       GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                C+nCgt++  Tp +Rrgp g++tLCnaCGl+++ kg+
  462911167 286 CQNCGTSEkmTPAMRRGPAGPRTLCNACGLMWANKGT 322
                **********************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009791.7E-95691IPR010399Tify domain
PROSITE profilePS5132014.7635691IPR010399Tify domain
PfamPF062002.3E-135890IPR010399Tify domain
SMARTSM009791.7E-9145180IPR010399Tify domain
PROSITE profilePS5132014.763145180IPR010399Tify domain
PfamPF062002.3E-13147179IPR010399Tify domain
PfamPF062031.7E-14214254IPR010402CCT domain
PROSITE profilePS5101713.364214256IPR010402CCT domain
SMARTSM004013.8E-10280333IPR000679Zinc finger, GATA-type
PROSITE profilePS501148.59280324IPR000679Zinc finger, GATA-type
SuperFamilySSF577168.08E-11283330No hitNo description
Gene3DG3DSA:3.30.50.109.8E-14285324IPR013088Zinc finger, NHR/GATA-type
CDDcd002028.95E-16285334No hitNo description
PROSITE patternPS003440286313IPR000679Zinc finger, GATA-type
PfamPF003202.9E-14286322IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MADAAAARDA DAEMRDPAAS ADDSEDEEDD VDDDDEELPG PAPVQEAPAP APVSAFPANP  60
NQLTLLFQGE VYVFDSVTPD KVQAVLLLLG SGELPPGLAG MVLPNQNENK DDSEDEEDDV  120
DDDDEELPGP APVQEAPAPA PVSAFPANPN QLTLLFQGEV YVFDSVTPDK VQAVLLLLGS  180
GELPPGLAGM VLPNQNENKG YDDILRRTDI PAKRVASLIR FREKRKERNF DKKIRYAVRK  240
EVALRMQRRK GQFAGRASLE GESPATSCDP ASQGSGQDFP SRESKCQNCG TSEKMTPAMR  300
RGPAGPRTLC NACGLMWANK GTLRSCPKAK VESPMVALEQ YPQSNLAASQ SGSDNKALVI  360
PKNGNDAASS GDVMDDLVPA DAADIGAPKA L
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00369DAPTransfer from AT3G21175Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap462911167
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9637540.0EU963754.1 Zea mays clone 272371 GATA transcription factor 25 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002464073.11e-146GATA transcription factor 18
SwissprotA2XKR71e-143GAT18_ORYSI; GATA transcription factor 18
TrEMBLC5WPL51e-145C5WPL5_SORBI; Uncharacterized protein
STRINGSb01g011840.11e-145(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34603773
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.27e-59ZIM-like 1