PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462910900
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family HSF
Protein Properties Length: 314aa    MW: 33534.7 Da    PI: 6.0531
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462910900genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1063e-33391302102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   F+ k+y++++d++++ +i w +++nsfvv d+  f++++Lp +Fkhsnf+SFvRQLn+YgF+kv+ ++         weF+h  F +g+++ll++i 
     462910900  39 FVAKTYRMVDDPATDAVIGWGADNNSFVVADPFVFSQTLLPAHFKHSNFSSFVRQLNTYGFRKVDPDR---------WEFAHVAFLRGQTHLLRQIV 126
                   9****************************************************************999.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r++s
     462910900 127 RRSS 130
                   **97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.104.3E-3735128IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.29E-3235128IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.1E-5135128IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-173962IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.7E-2939128IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-177789IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434078102IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-1790102IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MTSGGVVVDA APGVAPFVAN PGMTSGGVVV DAAPGVAPFV AKTYRMVDDP ATDAVIGWGA  60
DNNSFVVADP FVFSQTLLPA HFKHSNFSSF VRQLNTYGFR KVDPDRWEFA HVAFLRGQTH  120
LLRQIVRRSS GNGKRKDDDA AGDIDADGAA SVAMEVVRLR REQRAIEDRV AAMWRRVQET  180
ERRPKQMLAF LVKETERRPK QMLAFLVKVA GDPQVLRRLL ASSAGRLDAA GGGNFASSGN  240
PADGGPEVVK RPRLLLDADA AGGHASDGMY GAAGDDAIDI DGFYATENDV GFGAAEAGYM  300
PQPYAFPVDS TSGY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-24221306131Heat shock factor protein 1
5d5v_B2e-24221306131Heat shock factor protein 1
5d5v_D2e-24221306131Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462910900
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9766691e-135EU976669.1 Zea mays clone 986698 heat shock factor protein 1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001152657.11e-110heat shock factor protein 1
SwissprotQ6EUG44e-96HFC2A_ORYSJ; Heat stress transcription factor C-2a
TrEMBLA0A0A9F8Q01e-110A0A0A9F8Q0_ARUDO; Uncharacterized protein
STRINGGRMZM2G105348_P011e-110(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44713470
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.12e-53heat shock transcription factor C1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]