PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462910861 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | BES1 | ||||||||
Protein Properties | Length: 123aa MW: 13274.7 Da PI: 9.616 | ||||||||
Description | BES1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF822 | 150.1 | 1.7e-46 | 27 | 95 | 5 | 73 |
DUF822 5 rkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgs 73 r p+w+ErEnn+ RERrRRaiaaki+ GLRa+Gny+lpk++DnneVlkALc+eAGw+ve+DGttyrk++ 462910861 27 RVPSWRERENNRNRERRRRAIAAKIFGGLRAYGNYRLPKHCDNNEVLKALCNEAGWTVEPDGTTYRKHC 95 89*****************************************************************97 PP | |||||||
2 | DUF822 | 60.4 | 7.5e-19 | 92 | 121 | 42 | 71 |
DUF822 42 pkraDnneVlkALcreAGwvvedDGttyrk 71 +k++DnneVlkALc+eAGw+ve+DGttyrk 462910861 92 RKHCDNNEVLKALCNEAGWTVEPDGTTYRK 121 79***************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05687 | 5.1E-43 | 27 | 93 | IPR008540 | BES1/BZR1 plant transcription factor, N-terminal |
Pfam | PF05687 | 2.8E-17 | 92 | 121 | IPR008540 | BES1/BZR1 plant transcription factor, N-terminal |
Sequence ? help Back to Top |
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Protein Sequence Length: 123 aa Download sequence Send to blast |
MNGVGGGGAA GAGAGGNGGG GGSWPVRVPS WRERENNRNR ERRRRAIAAK IFGGLRAYGN 60 YRLPKHCDNN EVLKALCNEA GWTVEPDGTT YRKHCDNNEV LKALCNEAGW TVEPDGTTYR 120 KVS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zd4_A | 2e-22 | 27 | 95 | 372 | 440 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_B | 2e-22 | 27 | 95 | 372 | 440 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_C | 2e-22 | 27 | 95 | 372 | 440 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_D | 2e-22 | 27 | 95 | 372 | 440 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May function in brassinosteroid signaling. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462910861 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK101229 | 4e-68 | AK101229.1 Oryza sativa Japonica Group cDNA clone:J033031H19, full insert sequence. | |||
GenBank | AP003682 | 4e-68 | AP003682.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0427B07. | |||
GenBank | AP003686 | 4e-68 | AP003686.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0659D09. | |||
GenBank | AP014962 | 4e-68 | AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012614 | 4e-68 | CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010675300.1 | 3e-40 | PREDICTED: BES1/BZR1 homolog protein 4 | ||||
Swissprot | Q6EUF1 | 4e-30 | BZR4_ORYSJ; Protein BZR1 homolog 4 | ||||
TrEMBL | A0A4D8Z6E1 | 1e-36 | A0A4D8Z6E1_SALSN; Uncharacterized protein | ||||
STRING | XP_010675300.1 | 1e-39 | (Beta vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1366 | 38 | 112 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19350.6 | 4e-25 | BES1 family protein |