PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462910755 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | MYB_related | ||||||||
Protein Properties | Length: 244aa MW: 27030.4 Da PI: 8.1289 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.6 | 2.4e-17 | 61 | 106 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rgr+T+ E+ l++++++++G++ W++Iar+++ gRt++++k++w++++ 462910755 61 RGRMTPNEERLILELHARWGNR-WSRIARRLP-GRTDNEIKNYWRTHM 106 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 4.426 | 41 | 55 | IPR017877 | Myb-like domain |
SuperFamily | SSF46689 | 5.01E-22 | 41 | 113 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.9E-10 | 41 | 68 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 26.056 | 56 | 110 | IPR017930 | Myb domain |
SMART | SM00717 | 1.3E-15 | 60 | 108 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.7E-15 | 61 | 105 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 9.39E-13 | 63 | 106 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.8E-20 | 69 | 107 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MDRAGGPATV AATTCVVSTN RSSSFLLASS PSLLNLHAGL NRTGKSCRLR WVNYLHPGLK 60 RGRMTPNEER LILELHARWG NRWSRIARRL PGRTDNEIKN YWRTHMRKKA QERKRTMSPS 120 SSSSSLTYQS GYPDTSSIIG TEEQELHGGN SGCITSILKG TAPDMDVYPM DQIWMEIEAP 180 EAPSATGFDG EKTQDHAFSS LPGPLPPSAA WDYYCPPADT CWKMDDEIKM APQFGFSEGA 240 GPCF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 2e-18 | 42 | 110 | 37 | 105 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462910755 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021321599.1 | 1e-114 | myb-related protein MYBAS2-like isoform X3 | ||||
Swissprot | Q4JL76 | 5e-99 | MYBA2_ORYSJ; Myb-related protein MYBAS2 | ||||
TrEMBL | A0A1Z5R7D0 | 1e-113 | A0A1Z5R7D0_SORBI; Uncharacterized protein | ||||
STRING | Si023104m | 1e-112 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP636 | 37 | 169 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G46130.3 | 8e-50 | myb domain protein 48 |
Publications ? help Back to Top | |||
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