PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462910554
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family MYB_related
Protein Properties Length: 70aa    MW: 8021.21 Da    PI: 10.4374
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462910554genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.38.4e-092963440
                     S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS
  Myb_DNA-binding  4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40
                      T++Ed ++  + +  G++ W+ Ia++++ gRt++++
        462910554 29 YTEQEDRIICSLYNSIGSR-WSIIASKLP-GRTDNDV 63
                     79*****************.*********.*****97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.733124IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.9E-12633IPR009057Homeodomain-like
SuperFamilySSF466891.7E-18663IPR009057Homeodomain-like
PROSITE profilePS500907.3522163IPR017877Myb-like domain
PfamPF002491.4E-72763IPR001005SANT/Myb domain
CDDcd001672.50E-52963No hitNo description
Gene3DG3DSA:1.10.10.602.3E-123463IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 70 aa     Download sequence    Send to blast
MGTGLNRCGK SCRLRWLNYL RPDIKHGGYT EQEDRIICSL YNSIGSRWSI IASKLPGRTD  60
NDVGVLRRRP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-177634096B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that functions as regulator of genes affecting cell wall organization and remodeling. Activates genes related to the primary cell wall and represses genes related to the secondary cell wall and expansins. Required for the regulation of longitudinal cell growth in stems, leaves, petioles, roots, flowers and siliques. {ECO:0000269|PubMed:24563287}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462910554
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHF6794311e-82HF679431.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB25 protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008656763.12e-38transcription factor MYB4
RefseqXP_015637875.11e-38transcription factor RAX2
SwissprotF4JSU04e-33MYB87_ARATH; Transcription factor MYB87
TrEMBLA0A1W0VZ152e-37A0A1W0VZ15_SORBI; Uncharacterized protein
STRINGORUFI05G26880.14e-38(Oryza rufipogon)
STRINGOS05T0553400-014e-38(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13538412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37780.12e-35myb domain protein 87
Publications ? help Back to Top
  1. Fujiwara S, et al.
    Chimeric repressor analysis identifies MYB87 as a possible regulator of morphogenesis via cell wall organization and remodeling in Arabidopsis.
    Biotechnol. Lett., 2014. 36(5): p. 1049-57
    [PMID:24563287]