PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 462909713 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 935aa MW: 103373 Da PI: 4.4293 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 30.5 | 8.5e-10 | 20 | 55 | 12 | 48 |
HHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 12 lvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 l ++ +G+++W++Ia+ + +t+ qc+ rw++yl 462909713 20 LRSQIAIHGTDNWTLIAAQFR-DKTARQCRRRWYNYL 55 6677899**************.**************7 PP | |||||||
2 | Myb_DNA-binding | 25.1 | 4e-08 | 61 | 96 | 1 | 38 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlk 38 +g W+ eEd ll +a k lG++ W+ Ia+ + gR +k 462909713 61 KGGWSREEDMLLCEAQKVLGNR-WTEIAKVVS-GRRAK 96 688*******************.*********.99887 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.283 | 1 | 59 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.9E-16 | 16 | 62 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 0.0025 | 16 | 57 | IPR001005 | SANT/Myb domain |
Pfam | PF13921 | 7.9E-11 | 16 | 72 | No hit | No description |
CDD | cd00167 | 8.73E-9 | 16 | 55 | No hit | No description |
SuperFamily | SSF46689 | 5.08E-18 | 16 | 95 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 7.34 | 56 | 98 | IPR017877 | Myb-like domain |
SMART | SM00717 | 0.036 | 60 | 126 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-11 | 63 | 96 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.82E-6 | 64 | 97 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 935 aa Download sequence Send to blast |
MMGVQYKSYL TLCCLEDGVL RSQIAIHGTD NWTLIAAQFR DKTARQCRRR WYNYLNSECK 60 KGGWSREEDM LLCEAQKVLG NRWTEIAKVV SGRRAKDEEP YSESGTPCSN ANAKRVLTQI 120 RCLTPGAAES SLPIKPISSD LKENIIPNMR LFGQEKGAPD ARQPLAIISS SNKDNVKIVE 180 TQNLVAKNVT KQLTGVKRER EGSFLNKDDP KVATLLQQAD LLSSLAVKIK TENTSQSMDE 240 AWQQLQHHLV KKDDSEMSES SMSGMASLLD ELDDLIVDPY ENKKEDEQEQ REQNGPINEH 300 DEHCNASSQG SKEVISHMAS DEMMDDCPRD VIDHSSLSEN TLSGNVEPCP GTEIPASEKL 360 SEVAEDSMLH CMESTPPVVT DFDDLIVDPY EAYAQKVLGN RWTEIAKVVS GRRAKDEESY 420 SESGTPCSNA NAKRVLTQIR CLTPGAAESS LPIKPISSDL KENIVPNMRL FGQEKSAQDA 480 RQPLAIISSS NKDNVKIVET QNLVAKTVTK QLIGVKRERE GSFLNKDYPK VATLLQQADL 540 LSSLAVKIKT ENTSQSMDEA WQQLQHHLVK KDDSEMSESS MSGMASLLDE LDDLIVDPYE 600 NKKEDEQEQR EQNGPINEHD EHCNASSQGS KEVISHMASD EMMDDCPRDV IDHSSLSENT 660 LSGNVEPCPG TEIPASEKLS EVAEDSMLHC MESTPPVVTD FDDLIVDPYE GTEEDEQKLR 720 EESGQIDVHG EHSKGSTQTS MELTPDMVPV LNTEDCPVDN CREDNSLCIS ILSGTMESCP 780 DADHPASEYL CEVAEDCMLQ LQGVESASPV QTNSQSKACA EIPVSENRSK VAEGSRIQGI 840 EFNSPAHVVL QEKAGAFASP KFGEVRKDSK LPSTEFMSPA HTVPTFQPYE ADMPTPKFTA 900 SERNFLLSVL ELTSPGSKPE TSQQPSCKRA LLNSL |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-20 | 16 | 93 | 14 | 91 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | 462909713 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_022680418.1 | 0.0 | transcription factor MYB88 isoform X2 | ||||
TrEMBL | A0A1E5ULK9 | 0.0 | A0A1E5ULK9_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J36475.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8903 | 38 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G14350.2 | 3e-50 | MYB family protein |