PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462909713
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family MYB
Protein Properties Length: 935aa    MW: 103373 Da    PI: 4.4293
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462909713genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.58.5e-1020551248
                     HHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding 12 lvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     l   ++ +G+++W++Ia+ +   +t+ qc+ rw++yl
        462909713 20 LRSQIAIHGTDNWTLIAAQFR-DKTARQCRRRWYNYL 55
                     6677899**************.**************7 PP

2Myb_DNA-binding25.14e-086196138
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlk 38
                     +g W+ eEd ll +a k lG++ W+ Ia+ +  gR +k
        462909713 61 KGGWSREEDMLLCEAQKVLGNR-WTEIAKVVS-GRRAK 96
                     688*******************.*********.99887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.283159IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.9E-161662IPR009057Homeodomain-like
SMARTSM007170.00251657IPR001005SANT/Myb domain
PfamPF139217.9E-111672No hitNo description
CDDcd001678.73E-91655No hitNo description
SuperFamilySSF466895.08E-181695IPR009057Homeodomain-like
PROSITE profilePS500907.345698IPR017877Myb-like domain
SMARTSM007170.03660126IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-116396IPR009057Homeodomain-like
CDDcd001678.82E-66497No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 935 aa     Download sequence    Send to blast
MMGVQYKSYL TLCCLEDGVL RSQIAIHGTD NWTLIAAQFR DKTARQCRRR WYNYLNSECK  60
KGGWSREEDM LLCEAQKVLG NRWTEIAKVV SGRRAKDEEP YSESGTPCSN ANAKRVLTQI  120
RCLTPGAAES SLPIKPISSD LKENIIPNMR LFGQEKGAPD ARQPLAIISS SNKDNVKIVE  180
TQNLVAKNVT KQLTGVKRER EGSFLNKDDP KVATLLQQAD LLSSLAVKIK TENTSQSMDE  240
AWQQLQHHLV KKDDSEMSES SMSGMASLLD ELDDLIVDPY ENKKEDEQEQ REQNGPINEH  300
DEHCNASSQG SKEVISHMAS DEMMDDCPRD VIDHSSLSEN TLSGNVEPCP GTEIPASEKL  360
SEVAEDSMLH CMESTPPVVT DFDDLIVDPY EAYAQKVLGN RWTEIAKVVS GRRAKDEESY  420
SESGTPCSNA NAKRVLTQIR CLTPGAAESS LPIKPISSDL KENIVPNMRL FGQEKSAQDA  480
RQPLAIISSS NKDNVKIVET QNLVAKTVTK QLIGVKRERE GSFLNKDYPK VATLLQQADL  540
LSSLAVKIKT ENTSQSMDEA WQQLQHHLVK KDDSEMSESS MSGMASLLDE LDDLIVDPYE  600
NKKEDEQEQR EQNGPINEHD EHCNASSQGS KEVISHMASD EMMDDCPRDV IDHSSLSENT  660
LSGNVEPCPG TEIPASEKLS EVAEDSMLHC MESTPPVVTD FDDLIVDPYE GTEEDEQKLR  720
EESGQIDVHG EHSKGSTQTS MELTPDMVPV LNTEDCPVDN CREDNSLCIS ILSGTMESCP  780
DADHPASEYL CEVAEDCMLQ LQGVESASPV QTNSQSKACA EIPVSENRSK VAEGSRIQGI  840
EFNSPAHVVL QEKAGAFASP KFGEVRKDSK LPSTEFMSPA HTVPTFQPYE ADMPTPKFTA  900
SERNFLLSVL ELTSPGSKPE TSQQPSCKRA LLNSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-2016931491B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap462909713
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022680418.10.0transcription factor MYB88 isoform X2
TrEMBLA0A1E5ULK90.0A0A1E5ULK9_9POAL; Uncharacterized protein
STRINGPavir.J36475.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89033847
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14350.23e-50MYB family protein