PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462909531
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family GATA
Protein Properties Length: 449aa    MW: 49068.9 Da    PI: 7.7681
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462909531genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA52.18.9e-17741135
       GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
               C++Cg+t+TplWR+gp  ++ LCnaCG ++r kg+
  462909531  7 CRHCGVTSTPLWRNGPPEKPVLCNACGSRFRTKGS 41
               ****************88888***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.4E-11153IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.94E-11446No hitNo description
CDDcd002027.30E-15640No hitNo description
PROSITE patternPS003440732IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.438740IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.7E-12741IPR013088Zinc finger, NHR/GATA-type
PfamPF003201.4E-14741IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MGKTGPCRHC GVTSTPLWRN GPPEKPVLCN ACGSRFRTKG SLANYTPMNR RDDIDDEEPR  60
VSKLKPPTSK PKAQKAKKKP PTIVENGPFS SQNFRRMADA DPSNRSSSGS AVSYSESCAP  120
YGSADASEMT GSAQSHAWES LVPSRKRSCV NRPRPSPVEK LAKDLHSIMH EEQLYYLSGS  180
SEEDLLYHSE TPLGSVEMGS GSVLLRHPNS KLLEEESEAS SIPAENKSYI TSESYSGSAS  240
FVVHSGSKAA SNLNAATEGP KRSLPQIEDN VRRDTLHYEN PHILESVDSP LVSIDLEAKE  300
FKETGEEENI SGLKGTKPAM KQLKRPRDTH FHTSAELKVA MRSPKRVLKQ GDLAPQCRSS  360
SLPKSGYADL ACTGRALNLF SLPPEKLSSL ISPQYTDNYS DQDLLLDIPV NARHPEAELL  420
YQPSQLSSVT RISTCMGGVA EGEGRLKQQ
Cis-element ? help Back to Top
SourceLink
PlantRegMap462909531
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825377.10.0uncharacterized protein LOC112900793
TrEMBLA0A2S3I8X40.0A0A2S3I8X4_9POAL; Uncharacterized protein
STRINGSb06g024200.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44243464
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.32e-61GATA transcription factor 26