PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462909522
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family HD-ZIP
Protein Properties Length: 269aa    MW: 29972.7 Da    PI: 7.9839
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462909522genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.71.1e-1955108456
                -SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox   4 RttftkeqleeLeelFek.nrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                +++ft+eq++ Le++F+  + ++  +e++eLA++lgL+ rqV +WFqN+Ra+++
  462909522  55 KRRFTEEQIRSLESMFHAhHAKLEPREKAELARELGLQPRQVAIWFQNKRARWR 108
                458**************9899********************************9 PP
2HD-ZIP_I/II123.69.1e-4053146193
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeee.kLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                  e+krr+++eq+++LE++F++++ kLep++K+elareLglqprqva+WFqn+RAR+++kqlE+dy++L++++dal+++ e+L++e+ +L+++l+e
    462909522  53 ERKRRFTEEQIRSLESMFHAHHaKLEPREKAELARELGLQPRQVAIWFQNKRARWRSKQLEHDYASLRAKFDALRDRVESLKQEKLALASQLHE 146
                  69******************999*******************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.49E-1931112IPR009057Homeodomain-like
PROSITE profilePS5007117.52449110IPR001356Homeobox domain
SMARTSM003898.6E-2052114IPR001356Homeobox domain
CDDcd000865.84E-1654111No hitNo description
Gene3DG3DSA:1.10.10.608.5E-2055117IPR009057Homeodomain-like
PfamPF000464.1E-1755108IPR001356Homeobox domain
PRINTSPR000316.8E-78190IPR000047Helix-turn-helix motif
PROSITE patternPS00027085108IPR017970Homeobox, conserved site
PRINTSPR000316.8E-790106IPR000047Helix-turn-helix motif
SuperFamilySSF902577.06E-5109158No hitNo description
PfamPF021834.4E-13110151IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MDRADHHNQF FMPPPSLPQQ QQLCVPMMEE HSPPSFLAGR GSGGGGAAPG RGERKRRFTE  60
EQIRSLESMF HAHHAKLEPR EKAELARELG LQPRQVAIWF QNKRARWRSK QLEHDYASLR  120
AKFDALRDRV ESLKQEKLAL ASQLHELSER LREREDRGRN GGGGATTTTT EASSSSCNND  180
GGEDQDDKRH VDLAAGCVDM EPPEMSCVLG GGACATPADV SPLRPHADLR EQLEKRWCET  240
LLLRGGQMRR GGEISCCALV RPCGTSKTR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462909522
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}.
UniProtINDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7282501e-115KJ728250.1 Zea mays clone pUT6527 HB transcription factor (HB66) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004976404.16e-94homeobox-leucine zipper protein HOX22
SwissprotQ01IK02e-72HOX22_ORYSI; Homeobox-leucine zipper protein HOX22
SwissprotQ7XUJ52e-72HOX22_ORYSJ; Homeobox-leucine zipper protein HOX22
TrEMBLA0A368RX291e-92A0A368RX29_SETIT; Uncharacterized protein
STRINGSi010550m5e-91(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40273175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.13e-32homeobox 7