PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462909347 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | MYB | ||||||||
Protein Properties | Length: 204aa MW: 22845 Da PI: 10.9239 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 40.5 | 6.2e-13 | 16 | 60 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+l+ ++++G +W++I+r ++k+c++rw +yl 462909347 16 KGLWSPEEDERLASHIARFGVSSWSSIPRIRR---CGKSCRLRWMNYL 60 678**************************976...***********97 PP | |||||||
2 | Myb_DNA-binding | 48.9 | 1.5e-15 | 66 | 108 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +gr++++E+el++ ++k lG+ W+ Ia++++ gR+++++k++w+ 462909347 66 KGRFSQQEEELIISLHKALGNS-WSQIAARLP-GRSDNEIKNFWN 108 79******************99.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.29 | 11 | 60 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.24E-27 | 14 | 107 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.7E-8 | 15 | 62 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.9E-12 | 16 | 60 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.8E-21 | 17 | 67 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.51E-9 | 19 | 60 | No hit | No description |
PROSITE profile | PS51294 | 24.281 | 61 | 115 | IPR017930 | Myb domain |
SMART | SM00717 | 4.9E-15 | 65 | 113 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.4E-14 | 66 | 108 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.17E-10 | 68 | 108 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.0E-26 | 68 | 115 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 204 aa Download sequence Send to blast |
MGRGNPCCSE EKKLRKGLWS PEEDERLASH IARFGVSSWS SIPRIRRCGK SCRLRWMNYL 60 RPDLKKGRFS QQEEELIISL HKALGNSWSQ IAARLPGRSD NEIKNFWNAR LRKKLRQKEA 120 SSSTGCSDRK HPPPAVFNPL QVLKDGFTDS SPASSAAVDT NQGTTAAAVF LESADRAGCA 180 IAVERKHGGG WTKQRRRLLE SLGR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 5e-29 | 13 | 115 | 24 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 109 | 115 | RLRKKLR |
2 | 110 | 116 | LRKKLRQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462909347 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025817318.1 | 6e-78 | myb-related protein Hv33-like | ||||
Swissprot | Q8LPH6 | 2e-53 | MYB86_ARATH; Transcription factor MYB86 | ||||
TrEMBL | A0A3L6SVX5 | 8e-78 | A0A3L6SVX5_PANMI; Transcription factor MYB82-like | ||||
STRING | Pavir.Eb00460.1.p | 6e-81 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14448 | 17 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26660.1 | 1e-55 | myb domain protein 86 |