PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462909305

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

NAC

Protein Properties

Length: 110aa MW: 12358.1 Da PI: 10.8531

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462909305	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	105.1	8.9e-33	6	82	53	128
NAM 53 aeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++kewyfFs+rd+ky++g r+nra+ sgyWkatg+dk++ s+ +ge vg+kk Lvfykgr pkg+kt+W+mheyrl 462909305 6 YGDKEWYFFSPRDRKYPNGIRPNRAAGSGYWKATGTDKPISSAtTGESVGVKKELVFYKGRPPKGTKTNWIMHEYRL 82 4789***********************************9878999*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	36.665	1	98	IPR003441	NAC domain
SuperFamily	SSF101941	9.55E-36	3	89	IPR003441	NAC domain
Pfam	PF02365	2.1E-16	9	82	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 110 aa Download sequence Send to blast
MAKAAYGDKE WYFFSPRDRK YPNGIRPNRA AGSGYWKATG TDKPISSATT GESVGVKKEL 60 VFYKGRPPKG TKTNWIMHEY RLAADAHAAH AYRPMKFRNA SMRVRALASS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	8e-41	3	82	65	142	NO APICAL MERISTEM PROTEIN
1ut4_B	8e-41	3	82	65	142	NO APICAL MERISTEM PROTEIN
1ut7_A	8e-41	3	82	65	142	NO APICAL MERISTEM PROTEIN
1ut7_B	8e-41	3	82	65	142	NO APICAL MERISTEM PROTEIN
3swm_A	8e-41	3	82	68	145	NAC domain-containing protein 19
3swm_B	8e-41	3	82	68	145	NAC domain-containing protein 19
3swm_C	8e-41	3	82	68	145	NAC domain-containing protein 19
3swm_D	8e-41	3	82	68	145	NAC domain-containing protein 19
3swp_A	8e-41	3	82	68	145	NAC domain-containing protein 19
3swp_B	8e-41	3	82	68	145	NAC domain-containing protein 19
3swp_C	8e-41	3	82	68	145	NAC domain-containing protein 19
3swp_D	8e-41	3	82	68	145	NAC domain-containing protein 19
4dul_A	8e-41	3	82	65	142	NAC domain-containing protein 19
4dul_B	8e-41	3	82	65	142	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. The tetraploid cultivated wheat (T.durum) contains one additional gene coding for a functional protein (NAM-A1) and one extra pseudogene (NAM-B1) (PubMed:17124321). Plays a weaker role in terminal senescence than NAM-A1. {ECO:0000269\|PubMed:17124321, ECO:0000269\|PubMed:22278768}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462909305

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ728029	1e-113	KJ728029.1 Zea mays clone pUT6168 NAC transcription factor (NAC44) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002465328.1	2e-64	NAC transcription factor 29
Swissprot	A0SPJ6	5e-42	NAMB2_TRITD; NAC transcription factor NAM-B2
TrEMBL	A0A3G2LN22	2e-63	A0A3G2LN22_9POAL; NAC transcription factor
STRING	Sb01g036560.1	6e-64	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13797	19	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15510.1	1e-41	NAC domain containing protein 2

Publications ? help Back to Top
Uauy C,Distelfeld A,Fahima T,Blechl A,Dubcovsky J A NAC Gene regulating senescence improves grain protein, zinc, and iron content in wheat. Science, 2006. 314(5803): p. 1298-301 [PMID:17124321]