PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462909186 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | AP2 | ||||||||
Protein Properties | Length: 825aa MW: 90390 Da PI: 5.4954 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.4 | 3.1e-17 | 233 | 283 | 1 | 53 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkl 53 + ++GVr++ + grWv+e+r+p g + r +lg+f+tae+Aa+a++aa++++ 462909186 233 PVFRGVRRRGNAGRWVCEVRVP---GrRGCRLWLGTFDTAEGAARAHDAAMLAI 283 579******************9...6445**********************987 PP | |||||||
2 | AP2 | 54.4 | 3.1e-17 | 366 | 416 | 1 | 53 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkl 53 + ++GVr++ + grWv+e+r+p g + r +lg+f+tae+Aa+a++aa++++ 462909186 366 PVFRGVRRRGNAGRWVCEVRVP---GrRGCRLWLGTFDTAEGAARAHDAAMLAI 416 579******************9...6445**********************987 PP | |||||||
3 | AP2 | 37.6 | 5.7e-12 | 584 | 623 | 1 | 43 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAa 43 + ++GVr++ + grWv+e+r+p g + r +lg+f+t eA+ 462909186 584 PVFRGVRRRGNAGRWVCEVRVP---GrRGCRLWLGTFDT-AEAR 623 579******************9...6445**********.8887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.4E-12 | 233 | 285 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.811 | 234 | 293 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.57E-17 | 234 | 295 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 5.4E-27 | 234 | 295 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.6E-19 | 234 | 299 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.86E-20 | 235 | 295 | No hit | No description |
Pfam | PF00847 | 1.4E-12 | 366 | 418 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.811 | 367 | 426 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.4E-27 | 367 | 428 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.6E-19 | 367 | 432 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.57E-17 | 367 | 428 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 4.86E-20 | 368 | 428 | No hit | No description |
Pfam | PF00847 | 1.4E-8 | 584 | 623 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.54E-9 | 585 | 622 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 14.276 | 585 | 624 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.6E-14 | 585 | 624 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 8.6E-5 | 585 | 645 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 825 aa Download sequence Send to blast |
MCGPIKKEMS CESSSPCSSA STSSDHNTVW TSPPKRPAGR TKFRETRHPV YRGVRRRGTA 60 GLDEVRHAVA DAVEEFQRRE ALAEEDAGSA ASSAPSSPAT DGEDTTDSEE SSLAAEDATF 120 ELDVFSDMSW DVYYASLAQG MLVEPPSLAT AFVDDNAVDV HPQHQSSIKG IQIKTPGFRN 180 RELILNKMCP LKEEMSVESS SPCSSTSSEH QTVWTSPPKK PAGRTKFRET RHPVFRGVRR 240 RGNAGRWVCE VRVPGRRGCR LWLGTFDTAE GAARAHDAAM LAIAGSGACL NFADSAWLLA 300 VPASYHSLDD SRPAADRKKK MCPIKMEMSS DSSSPCSSTS SEHQTVWTSP PKKPAGRTKF 360 RETRHPVFRG VRRRGNAGRW VCEVRVPGRR GCRLWLGTFD TAEGAARAHD AAMLAIAGSG 420 ACLNFADSAW LLAVPASYHS LDDVRHAVAD AVEEFQRREA HAEDDARSAT SSTPSSPATD 480 GEDTTDGEES YPSMEDSTFE LDVFNDMSWD LYYASLAQGM LMEPPCLATA FGDDTMCPIN 540 PIKMEMSSDS SSPCSWTSSE HQTVWTSPPK KPAGRTKFRE TRHPVFRGVR RRGNAGRWVC 600 EVRVPGRRGC RLWLGTFDTA EARAGPCLNF ADSAWLLTVP ASYHSLDEVR HAVADAVEEF 660 QRREALAEED VRSATPSSSS ANSSDEDATD GEESSPAAED VTFELDVFND MSRAQSRRSA 720 TTAKPTSPIY RYYKTMDTPS PPQSSSTEPE EYMTVWSVPP KKPAGRTKFR ETRHPFDDGF 780 RFGGMDDAGS YYASLAQGLL VEPPADGSWW EDGESAGAEV ALWSY |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. Confers resistance to high salt, cold and drought stress (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462909186 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025799274.1 | 1e-104 | dehydration-responsive element-binding protein 1A-like | ||||
Swissprot | A2Z389 | 6e-87 | DRE1A_ORYSI; Dehydration-responsive element-binding protein 1A | ||||
TrEMBL | A0A1E5UT37 | 1e-168 | A0A1E5UT37_9POAL; Dehydration-responsive element-binding protein 1A | ||||
STRING | Pavir.J03891.1.p | 1e-107 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP196 | 36 | 261 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25470.1 | 5e-39 | C-repeat/DRE binding factor 2 |