PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462909130

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

G2-like

Protein Properties

Length: 452aa MW: 49508.2 Da PI: 6.27

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462909130	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	101.9	4e-32	266	320	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWt eLHerFveav++L G+ekAtPk +l+lmkv+gLt++hvkSHLQkYRl 462909130 266 KTRLRWTLELHERFVEAVNKLDGPEKATPKGVLKLMKVEGLTIYHVKSHLQKYRL 320 68****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.574	263	323	IPR017930	Myb domain
SuperFamily	SSF46689	4.12E-17	263	320	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.1E-30	264	321	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.3E-24	266	321	IPR006447	Myb domain, plants
Pfam	PF00249	3.6E-8	268	319	IPR001005	SANT/Myb domain
Pfam	PF14379	1.5E-21	356	402	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 452 aa Download sequence Send to blast
MSSQSSVTVK QMAAPDKTVH ASTSTQPLVH KLLDAKLDHQ VLVDDTLSST SQSSSIKTEL 60 MRSSSFSMSL TLSLQKRSPD TDPESPLSHV SHPNFSDPIP SNSSTFCTSL FSSSLSNPEP 120 TRQIGTLPFL PHPPKCEQQV SAGQSSSSSL LLSGDISNSI DESEHSDDLK DLLNLSGDGS 180 DGSYHGENNA LAFSEHMEFQ FLSEQLGIAI TDNESPRLDD IYGTPPQLSS LPVLSCSNQS 240 IQNPGSPVKV HLNSPRSSSG SATTNKTRLR WTLELHERFV EAVNKLDGPE KATPKGVLKL 300 MKVEGLTIYH VKSHLQKYRL AKYLPEPRED KKAPSEDKKA QSDSSSNDSG KKKNLQVAEA 360 LRMQMEVQKQ LHEQLEVQRQ LQLRIEEHAR YLQKLLEEQQ KAGNSLSLKT PTEAQAESPE 420 LTSKERGHEH LQSTLSGSML DEATGIALAP AK

Sequence ? help Back to Top

Protein Sequence Length: 452 aa Download sequence Send to blast

MSSQSSVTVK QMAAPDKTVH ASTSTQPLVH KLLDAKLDHQ VLVDDTLSST SQSSSIKTEL  60
MRSSSFSMSL TLSLQKRSPD TDPESPLSHV SHPNFSDPIP SNSSTFCTSL FSSSLSNPEP  120
TRQIGTLPFL PHPPKCEQQV SAGQSSSSSL LLSGDISNSI DESEHSDDLK DLLNLSGDGS  180
DGSYHGENNA LAFSEHMEFQ FLSEQLGIAI TDNESPRLDD IYGTPPQLSS LPVLSCSNQS  240
IQNPGSPVKV HLNSPRSSSG SATTNKTRLR WTLELHERFV EAVNKLDGPE KATPKGVLKL  300
MKVEGLTIYH VKSHLQKYRL AKYLPEPRED KKAPSEDKKA QSDSSSNDSG KKKNLQVAEA  360
LRMQMEVQKQ LHEQLEVQRQ LQLRIEEHAR YLQKLLEEQQ KAGNSLSLKT PTEAQAESPE  420
LTSKERGHEH LQSTLSGSML DEATGIALAP AK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-25	266	323	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-25	266	323	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-25	266	323	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-25	266	323	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-25	266	323	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-25	266	323	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-25	266	323	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-25	266	323	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in phosphate starvation signaling (PubMed:26082401). Binds to P1BS, an imperfect palindromic sequence 5'-GNATATNC-3', to promote the expression of inorganic phosphate (Pi) starvation-responsive genes (PubMed:26082401). Functionally redundant with PHR1 and PHR2 in regulating Pi starvation response and Pi homeostasis (PubMed:26082401). {ECO:0000269\|PubMed:26082401}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00354	DAP	Transfer from AT3G13040	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462909130

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated under Pi starvation conditions. {ECO:0000269\|PubMed:26082401}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025812859.1	0.0	protein PHOSPHATE STARVATION RESPONSE 3
Refseq	XP_025812860.1	0.0	protein PHOSPHATE STARVATION RESPONSE 3
Refseq	XP_025812862.1	0.0	protein PHOSPHATE STARVATION RESPONSE 3
Refseq	XP_025812863.1	0.0	protein PHOSPHATE STARVATION RESPONSE 3
Swissprot	Q6YXZ4	1e-160	PHR3_ORYSJ; Protein PHOSPHATE STARVATION RESPONSE 3
TrEMBL	A0A3L6PFL7	0.0	A0A3L6PFL7_PANMI; Uncharacterized protein
STRING	Pavir.J27649.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4526	37	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13040.2	2e-71	G2-like family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]