PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462909024
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family CO-like
Protein Properties Length: 400aa    MW: 43901.9 Da    PI: 5.001
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462909024genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box216.8e-07445540
   zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                C+ +++++   +C+++   lC +C  + H+       Ht++
  462909024  4 LCDFCGKQRSMVYCRSDAASLCLSCDRNVHSAnalsrrHTRT 45
               7*****************************657888889876 PP
2zf-B_box292.2e-094790542
   zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                C++++++++   C d++  lC++C  ++H        H+++++
  462909024 47 LCDRCSSQPAAVRCLDDNISLCQNCDWNGHDAasgaagHKRQSI 90
               7*****************************54788888988765 PP
3CCT639.1e-22344387144
        CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                R++al+RYkeK+k+RkF+KkirY+sRKa+A++R RvKGrF k+ 
  462909024 344 RDNALTRYKEKKKRRKFDKKIRYASRKARADTRRRVKGRFIKAG 387
                899*************************************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.6E-10147IPR000315B-box-type zinc finger
PROSITE profilePS5011910.153147IPR000315B-box-type zinc finger
CDDcd000211.45E-6447No hitNo description
PROSITE profilePS501199.34390IPR000315B-box-type zinc finger
PfamPF006435.4E-64790IPR000315B-box-type zinc finger
CDDcd000213.26E-54790No hitNo description
SMARTSM003360.114890IPR000315B-box-type zinc finger
PfamPF062037.8E-17344386IPR010402CCT domain
PROSITE profilePS5101715.408344386IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MAALCDFCGK QRSMVYCRSD AASLCLSCDR NVHSANALSR RHTRTLLCDR CSSQPAAVRC  60
LDDNISLCQN CDWNGHDAAS GAAGHKRQSI NCYSGCPSSA ELSRIWSFVM DIPTVAAEPN  120
CEDVISMMNI DDSDVSNHCD AMEDKRLLEI ASTTLMSDPP PGEKPKPLIG SCSGDGINIP  180
PLAADQTAGP VSVTPKVAEA TENDKFNDGN IYEDFCVDDA DLTFENYEEL FGTSHIQTEQ  240
LFDDAGIDSY FEMKEMLPAD SNEEHKYMQL ECSNMVSADS ARADSSLCIP VRQVRSSLSH  300
SFSGLTGESS AGDHQDCGVS PMVNMGEPPW RPPGPDGSCA GGSRDNALTR YKEKKKRRKF  360
DKKIRYASRK ARADTRRRVK GRFIKAGEAY DYDPLSPRSY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1353357KKKRR
2353358KKKRRK
3354358KKRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMap462909024
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025827948.10.0zinc finger protein CONSTANS-LIKE 9-like
TrEMBLA0A2S3GT850.0A0A2S3GT85_9POAL; Uncharacterized protein
TrEMBLA0A2T7FBG30.0A0A2T7FBG3_9POAL; Uncharacterized protein
STRINGSi017374m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20793788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07650.41e-108CONSTANS-like 9