PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462908901 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | AP2 | ||||||||
Protein Properties | Length: 478aa MW: 51650.5 Da PI: 8.3629 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 41.1 | 4.5e-13 | 158 | 214 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d ++ +g rk + g ++t+++Aa+a++ a++k++g 462908901 158 SQYRGVTRHRWTGRYEAHLWDnSCKrDGqTRKGRQ-GGYDTEDKAARAYDLAALKYWG 214 78*******************98887775446655.77***99*************98 PP | |||||||
2 | AP2 | 47.4 | 4.8e-15 | 257 | 308 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg++ t eeAa+a++ a+ k++g 462908901 257 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTYSTQEEAAEAYDIAAIKFRG 308 57****************988532...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 1.31E-14 | 158 | 224 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 7.0E-10 | 158 | 214 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 9.35E-18 | 158 | 223 | No hit | No description |
PROSITE profile | PS51032 | 17.675 | 159 | 222 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.8E-21 | 159 | 228 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.7E-12 | 159 | 223 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.6E-6 | 160 | 171 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.2E-10 | 257 | 308 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.11E-17 | 257 | 317 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.32E-23 | 257 | 318 | No hit | No description |
SMART | SM00380 | 2.6E-33 | 258 | 322 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 9.0E-18 | 258 | 316 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.019 | 258 | 316 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.6E-6 | 298 | 318 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 478 aa Download sequence Send to blast |
MEAPSSSEPA PPPHPPAPAS ATMSSSPNST TTCNFLFSSP AQMATPSPGY YYVGGAYGDG 60 TTTAGVYYSH PHLPVMPVKS DGSLCNMEGS QSSGCVGAAP QQQHQIVAVA AAASAAAAQG 120 RSNGGGEQCV GKKRGTGKGG HKQPVHRKSI DTFGQRTSQY RGVTRHRWTG RYEAHLWDNS 180 CKRDGQTRKG RQGGYDTEDK AARAYDLAAL KYWGPATHIN FPVEHYREEL EEMEGMTRLE 240 YVAHLRRRSS GFSRGASIYR GVTRHHQHGR WQARIGRVAG NKDLYLGTYS TQEEAAEAYD 300 IAAIKFRGLN AVTNFDVTRY DVEKIMESNV LLPGEEARRV KAIEPVHGAS VMHNSGRELN 360 QSGEAITEWR MGLHGASQEP APCIEAADLQ KSVMGDPHSS LHGIAGLDFS NSSSLVTSLG 420 NSREGSPERQ GPAMLYTKHP DAAVSLANMN PWMQMPAPHL LRPGNVSHLP VFAAWADA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462908901 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021318295.1 | 0.0 | AP2-like ethylene-responsive transcription factor ANT isoform X2 | ||||
Swissprot | Q84Z02 | 1e-135 | CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5 | ||||
TrEMBL | A0A0A9NXM7 | 0.0 | A0A0A9NXM7_ARUDO; Uncharacterized protein | ||||
STRING | Sb01g042090.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP948 | 38 | 133 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37750.1 | 1e-104 | AP2 family protein |
Publications ? help Back to Top | |||
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