PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462908782
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family E2F/DP
Protein Properties Length: 376aa    MW: 40510.3 Da    PI: 6.7303
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462908782genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP85.54.1e-27118204271
    E2F_TDP   2 keksLrlltqkflklleksee.givtlnevakeLvse....................dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                ++++Lr+++++   ++ek+e+ g++t+neva+eLv+e                    d+kn+rRR+YD+lNVL+a+++i+k +k+ei+wkg
  462908782 118 NGRGLRQFSMR---VCEKVESkGRTTYNEVADELVAEfsdpnnidspnpdnpnaqqyDEKNIRRRVYDALNVLMAMEIISK-DKKEIQWKG 204
                789********...*****999***********************************************************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0094043.8E-11924376IPR015648Transcription factor DP
Gene3DG3DSA:1.10.10.102.4E-45113210IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013722.9E-36117204IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023191.1E-24119204IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467852.99E-20120205IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd144589.95E-40209313IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440749.94E-39211320No hitNo description
SMARTSM011381.7E-69211374IPR014889Transcription factor DP, C-terminal
PfamPF087814.7E-38212323IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007049Biological Processcell cycle
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
RRPRASSLQH HSLPLLATLL GFLPTSSTPN SGSIPAAMAS SALPSGGAVH SASTSGGGAV  60
GSPSGHAASA SVSTPASEST VARRLNGLDL QGDDAPSSQP AVSKKKKRGA RAVGSDKNGR  120
GLRQFSMRVC EKVESKGRTT YNEVADELVA EFSDPNNIDS PNPDNPNAQQ YDEKNIRRRV  180
YDALNVLMAM EIISKDKKEI QWKGLPRTSM DEVEELKTEI VGMKGRIDKK SAYLQDLQDQ  240
YVSLQNLVQR NEQLYGSGDD APSGGVALPF ILVKTRPHAT VEVEISEDMQ LVHFDFNSTP  300
FELQDDSFVL KAMGLSGKEE TEVVQVPVAN GGDVECSSTP TDYWNQSPQP TRSRGLRLPP  360
SAPIPGILKG RVKHEH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B5e-35111209193PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462908782
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004983025.10.0transcription factor-like protein DPB
SwissprotQ9FNY21e-127DPB_ARATH; Transcription factor-like protein DPB
TrEMBLK4AC690.0K4AC69_SETIT; Uncharacterized protein
STRINGSi036476m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP128338109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-120Transcription factor DP