PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462908578
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family NAC
Protein Properties Length: 275aa    MW: 30286.6 Da    PI: 4.8023
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462908578genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM34.94.6e-112059141
        NAM  1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiyk 41
               lppGfrFhP+dee++++yL +kv ++++++  +i e+di++
  462908578 20 LPPGFRFHPSDEEIITYYLINKVLDDNFTA-IAIGETDINR 59
               79*************************999.7899999985 PP
2NAM63.56.6e-205911179128
        NAM  79 ksgyWkatgkdkevlskkgel...vglkktLvfykgrapkgektdWvmheyrl 128
                ++gyWkatgkdk +++  +++    g+kktLvfykgrap+g+ktdWvmheyr+
  462908578  59 RAGYWKATGKDKGIYCGASSVpvlLGMKKTLVFYKGRAPNGVKTDWVMHEYRI 111
                57**************744446779**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100520.9471137IPR003441NAC domain
SuperFamilySSF1019412.48E-3314117IPR003441NAC domain
PfamPF023656.5E-2021111IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MEDHEQLQQW RSGGADGLEL PPGFRFHPSD EEIITYYLIN KVLDDNFTAI AIGETDINRA  60
GYWKATGKDK GIYCGASSVP VLLGMKKTLV FYKGRAPNGV KTDWVMHEYR IDGKGQVPCP  120
AASSKSNTKK PCSSSKESEF TLVSAPSSRM PMDGGGEDLS CMNFPMPTEF LLEIEDFTDY  180
SNELYPLLDD PFAIFCSTDG MGSSVRHPLL PMVGMGGIGL EMDNDHFGNR MTISNPMKKA  240
QVAKLEVGLK MKAQLADDAI FQISTVAPMV KYVLE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-211811113140Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap462908578
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022682349.15e-53protein CUP-SHAPED COTYLEDON 1
TrEMBLA0A368R2722e-52A0A368R272_SETIT; Uncharacterized protein
STRINGPavir.Eb00839.1.p1e-54(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP145237121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18270.12e-38Arabidopsis NAC domain containing protein 87