PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462908447 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | B3 | ||||||||
Protein Properties | Length: 274aa MW: 29881.3 Da PI: 10.3415 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 68.8 | 7.6e-22 | 59 | 155 | 1 | 90 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SSSEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.grsef 90 f k lt+sdv+k++rl +p+k a ++ +g + + l++ed++g W ++++++++s+++vltkGW +Fvk+++L gD+v F+ g++++ 462908447 59 FSKRLTKSDVGKLNRLLIPRKEAGRFfptalgaMGADALP-FLIFEDSTGVIWHFRYTFWQSSKTFVLTKGWIRFVKEKKLSNGDTVFFYQRaGEDSK 155 8899*******************999*****995555676.6889*********************************************44133444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.0E-27 | 56 | 153 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.04E-21 | 57 | 147 | No hit | No description |
SuperFamily | SSF101936 | 1.96E-23 | 58 | 160 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 1.4E-18 | 59 | 157 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.6E-11 | 59 | 165 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.153 | 59 | 165 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 274 aa Download sequence Send to blast |
MQGEHTPMMH QSLLSMVNPV LSPIYGAPSA PMSAPVFPSG GGASALLGGG QGVDMDFMFS 60 KRLTKSDVGK LNRLLIPRKE AGRFFPTALG AMGADALPFL IFEDSTGVIW HFRYTFWQSS 120 KTFVLTKGWI RFVKEKKLSN GDTVFFYQRA GEDSKTMHRY IYFKKQDQVS FVPHDVPPPS 180 GTLNDSWLRK ALISSSHYTT NMGWKHVSSG SMGATPANLP ILPPSFVPQV PALGGGLGPA 240 KKRLRLFGVE INIPPHITTD ETFSHHAGSN NGGS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5os9_A | 6e-28 | 54 | 169 | 3 | 116 | B3 domain-containing transcription factor NGA1 |
5os9_B | 6e-28 | 54 | 169 | 3 | 116 | B3 domain-containing transcription factor NGA1 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462908447 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP16167 | 8 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46870.1 | 1e-32 | B3 family protein |