PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462907733 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 261aa MW: 29363.5 Da PI: 5.4088 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 61.8 | 1e-19 | 56 | 109 | 4 | 56 |
-SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFek.nrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ft+eq++ Le++F+ + ++ +e++eLA++lgL+ rqV +WFqN+Ra+++ 462907733 56 KRRFTEEQIRSLESMFHAhHAKLEPREKAELARELGLQPRQVAIWFQNKRARWR 109 458**************9899********************************9 PP | |||||||
2 | HD-ZIP_I/II | 124.6 | 4.5e-40 | 54 | 147 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeee.kLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 e+krr+++eq+++LE++F++++ kLep++K+elareLglqprqva+WFqn+RAR+++kqlE+dy++L++++dal+++ e+L++e+++L+++l+e 462907733 54 ERKRRFTEEQIRSLESMFHAHHaKLEPREKAELARELGLQPRQVAIWFQNKRARWRSKQLEHDYATLRAKFDALRDRVESLKQEKQALASQLRE 147 69******************999********************************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 5.72E-19 | 31 | 113 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.605 | 50 | 111 | IPR001356 | Homeobox domain |
SMART | SM00389 | 8.6E-20 | 53 | 115 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.64E-17 | 55 | 112 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.1E-19 | 56 | 118 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 3.9E-17 | 56 | 109 | IPR001356 | Homeobox domain |
PRINTS | PR00031 | 6.5E-7 | 82 | 91 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 86 | 109 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 6.5E-7 | 91 | 107 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 2.3E-14 | 111 | 152 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
MDRPDHHNQF FMPPQSLQQQ QQQLCVPMMD EHSPPSFLAG RGGGGAAPGT GRGERKRRFT 60 EEQIRSLESM FHAHHAKLEP REKAELAREL GLQPRQVAIW FQNKRARWRS KQLEHDYATL 120 RAKFDALRDR VESLKQEKQA LASQLRELSE RLRERDDRGR SGGGATTATT EASSSSCNNN 180 GGEEDDDKRH VLARCVDMEP PEMSCVLGGA CATPADVSVE STECDDGHHL DYDDGFLPDS 240 FCAATPELWE PWPLVEWNAV A |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462907733 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}. | |||||
UniProt | INDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025826405.1 | 1e-114 | homeobox-leucine zipper protein HOX22-like | ||||
Swissprot | Q01IK0 | 2e-94 | HOX22_ORYSI; Homeobox-leucine zipper protein HOX22 | ||||
Swissprot | Q7XUJ5 | 2e-94 | HOX22_ORYSJ; Homeobox-leucine zipper protein HOX22 | ||||
TrEMBL | A0A3L6FRG1 | 1e-114 | A0A3L6FRG1_MAIZE; Homeobox-leucine zipper protein HOX22 | ||||
STRING | Pavir.Ga00670.1.p | 1e-111 | (Panicum virgatum) | ||||
STRING | Si010550m | 1e-110 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4027 | 31 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46680.1 | 7e-33 | homeobox 7 |