PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462907574 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 146aa MW: 15906.6 Da PI: 8.9091 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.2 | 2.8e-18 | 70 | 117 | 9 | 56 |
HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 9 keqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++q +Lee+F+ +++++ +++ LA++lgL rqV vWFqNrRa+ k 462907574 70 SNQAAVLEECFKTHSTLNPKQKVALANRLGLRPRQVEVWFQNRRARTK 117 5799******************************************98 PP | |||||||
2 | HD-ZIP_I/II | 105.2 | 5.2e-34 | 64 | 133 | 1 | 71 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkrayd 71 +kk+rls +q+++LEe+F+++++L+p++Kv+la++Lgl+prqv+vWFqnrRARtk+kq+E+d+e+Lkr+ 462907574 64 RKKLRLS-NQAAVLEECFKTHSTLNPKQKVALANRLGLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCSG 133 6999998.69*********************************************************9965 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00389 | 5.1E-13 | 64 | 123 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.75E-13 | 64 | 120 | No hit | No description |
PROSITE profile | PS50071 | 14.56 | 70 | 119 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 4.9E-17 | 70 | 117 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.41E-16 | 70 | 128 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 1.1E-15 | 70 | 117 | IPR001356 | Homeobox domain |
PRINTS | PR00031 | 1.4E-5 | 90 | 99 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 94 | 117 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 1.4E-5 | 99 | 115 | IPR000047 | Helix-turn-helix motif |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 146 aa Download sequence Send to blast |
MDPDHQAGTT MRASTSPDSA AALSSGDSGS NKREREELLE RTGSGGVRGA GSDEEDGADG 60 TGGRKKLRLS NQAAVLEECF KTHSTLNPKQ KVALANRLGL RPRQVEVWFQ NRRARTKLKQ 120 TEVDCEYLKR CSGESPALQS IREMTS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 111 | 119 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}. | |||||
UniProt | Probable transcription factor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462907574 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP093288 | 6e-92 | FP093288.1 Phyllostachys edulis cDNA clone: bphylf053m07, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004964497.1 | 9e-65 | homeobox-leucine zipper protein HOX2 | ||||
Swissprot | Q5VPE3 | 2e-40 | HOX2_ORYSJ; Homeobox-leucine zipper protein HOX2 | ||||
Swissprot | Q84U86 | 2e-40 | HOX2_ORYSI; Homeobox-leucine zipper protein HOX2 | ||||
TrEMBL | K3XYL1 | 2e-63 | K3XYL1_SETIT; Uncharacterized protein | ||||
STRING | Si007019m | 3e-64 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3842 | 33 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06710.1 | 1e-35 | homeobox from Arabidopsis thaliana |
Publications ? help Back to Top | |||
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