PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462907362
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family GRAS
Protein Properties Length: 281aa    MW: 30261.3 Da    PI: 5.9591
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462907362genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS219.61.5e-672211156374
       GRAS 156 eeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFle 255
                + le+tg+rL++fA++lg+pfef + va++  ++++e+L v ++Ea+aV++ +  h+l+d ++s ++    +L+l+++l Pkvv++veq+++h s+sFl+
  462907362   2 DVLEATGKRLSDFADTLGLPFEFCA-VAEKAGNVDPEKLGVTRREAVAVHWLH--HSLYDVTGSDSN----TLWLIQRLAPKVVTMVEQDLSH-SGSFLA 93 
                5799*********************.7*************************9..999999999999....**********************.899*** PP

       GRAS 256 rflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveees 355
                rf+ea++yysalfdsl+a+++++s er++vE++ll+rei+nv+a  g +r  + + +++Wre+l ++GF++++l  +aa+qa+lll +++sdgy++ ee+
  462907362  94 RFVEAIHYYSALFDSLDASYGEDSPERHVVEQQLLSREIRNVLAVGGPARSGDVK-FGSWREKLAQSGFRAASLAGSAAAQASLLLGMFPSDGYTLVEEN 192
                *************************************************988887.******************************************** PP

       GRAS 356 gslvlgWkdrpLvsvSaWr 374
                g+l lgWkd  L+++SaWr
  462907362 193 GALKLGWKDLCLLTASAWR 211
                ******************8 PP
2GRAS48.81.3e-15217273318374
       GRAS 318 rleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                +l ++GF++++l  +aa+qa+lll +++sdgy++ ee+g+l lgWkd  L+++SaWr
  462907362 217 KLAQSGFRAASLAGSAAAQASLLLGMFPSDGYTLVEENGALKLGWKDLCLLTASAWR 273
                7899****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098530.1111191IPR005202Transcription factor GRAS
PfamPF035145.4E-652211IPR005202Transcription factor GRAS
PfamPF035144.4E-13217273IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MDVLEATGKR LSDFADTLGL PFEFCAVAEK AGNVDPEKLG VTRREAVAVH WLHHSLYDVT  60
GSDSNTLWLI QRLAPKVVTM VEQDLSHSGS FLARFVEAIH YYSALFDSLD ASYGEDSPER  120
HVVEQQLLSR EIRNVLAVGG PARSGDVKFG SWREKLAQSG FRAASLAGSA AAQASLLLGM  180
FPSDGYTLVE ENGALKLGWK DLCLLTASAW RPIQTSKLAQ SGFRAASLAG SAAAQASLLL  240
GMFPSDGYTL VEENGALKLG WKDLCLLTAS AWRPIQTSAG R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-1241274169380Protein SCARECROW
5b3h_A1e-1241274168379Protein SCARECROW
5b3h_D1e-1241274168379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for quiescent center cells specification and maintenance of surrounding stem cells, and for the asymmetric cell division involved in radial pattern formation in roots. Essential for cell division but not differentiation of the ground tissue. Regulates the radial organization of the shoot axial organs. Restricts SHR movment and sequesters it into the nucleus of the endodermis (By similarity). {ECO:0000250, ECO:0000269|PubMed:17446396}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462907362
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0636820.0BT063682.1 Zea mays full-length cDNA clone ZM_BFc0094J16 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015615402.11e-143protein SCARECROW 1
SwissprotQ2RB591e-144SCR1_ORYSJ; Protein SCARECROW 1
TrEMBLA0A0E0BMX41e-147A0A0E0BMX4_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0R3K11e-145A0A0E0R3K1_ORYRU; Uncharacterized protein
STRINGOGLUM12G01020.11e-148(Oryza glumipatula)
STRINGORUFI11G01380.11e-146(Oryza rufipogon)
STRINGOS11T0124300-011e-143(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP137138122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.11e-112GRAS family protein