PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462907353
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family ARF
Protein Properties Length: 707aa    MW: 77141.9 Da    PI: 7.6146
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462907353genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.84.9e-24125226199
                EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                f k+lt+sd+++ g +++p+ +ae++         ++ +  t+  +d +g +W++++iyr++++r++lt+GW+ Fv++++L +gD++vF+  +++++ l+
  462907353 125 FAKTLTQSDANNGGGFSVPRYCAETIfprldysADPPVQ--TVLAKDGHGVVWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFM--RTENGDLC 220
                89****************************996555555..8999*********************************************..4588999* PP

                EEEE-S CS
         B3  94 vkvfrk 99 
                v+++r+
  462907353 221 VGIRRA 226
                ***997 PP
2Auxin_resp116.32.7e-38283366183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                 aa+ a ++++FevvY+Prast+eF+vk+  v++a+++++++GmRfkmafetedss++++ +Gtv++v+ +dp+rWpnS+Wr+L+
   462907353 283 AANLAVSGQPFEVVYYPRASTPEFCVKAGAVRAAMRTQWCAGMRFKMAFETEDSSRISWfMGTVSAVQVADPIRWPNSPWRLLQ 366
                 688999****************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.2E-37116231IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.19E-29120225IPR015300DNA-binding pseudobarrel domain
CDDcd100172.08E-20124225No hitNo description
PROSITE profilePS5086313.014125227IPR003340B3 DNA binding domain
SMARTSM010193.1E-20125227IPR003340B3 DNA binding domain
PfamPF023621.9E-22125226IPR003340B3 DNA binding domain
PfamPF065075.0E-33283366IPR010525Auxin response factor
PROSITE profilePS5174514.914611693IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007389Biological Processpattern specification process
GO:0009733Biological Processresponse to auxin
GO:0048829Biological Processroot cap development
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 707 aa     Download sequence    Send to blast
MITFVDSAAM ERERESDKCL DPQLWHACAG GMVQMPPVHS KVYYFPQGHA EHAQGPVELP  60
AGRVPAVVLC RVVGVRYMAD PDTDEVFAKI RLAPVRPNEP GHAGDADDGI GAAAAAAQED  120
KPASFAKTLT QSDANNGGGF SVPRYCAETI FPRLDYSADP PVQTVLAKDG HGVVWKFRHI  180
YRGTPRRHLL TTGWSTFVNQ KKLVAGDSIV FMRTENGDLC VGIRRAKKGG IGGPEFLQHH  240
HPPPGGNYGG FSMFLRGDED GSKMMATRGK VRVRVRPEEV VEAANLAVSG QPFEVVYYPR  300
ASTPEFCVKA GAVRAAMRTQ WCAGMRFKMA FETEDSSRIS WFMGTVSAVQ VADPIRWPNS  360
PWRLLQECTA YIRFVTMMNT SVTWDEPDLL QNVKRVSPWL VELVSNMPAI HLAPFSPPPR  420
KKLCVPWELP LDGQFPAPMF HGSPLGRGVG PMCYFPDGTP AGIQGARHAQ FGISLSDLHL  480
NKLQSSLSHH GFHQLDHGMQ PRIAAGLIIG HPAARDDISC LLTIGTPQSK KPDVKKAAPQ  540
QLMLFGKPIL TEQQISLGDA LATAKKSPSD SNAEKTVSNS DISSPGSNQE ATTENLSSGG  600
DNRALDLGLE TGHCKVFMQS EDVGRTLDLS IFGSYEELYQ KLADMFGIEK SELTSHVFYR  660
DTSGALKHTG DKPFRFLEER GGDFEGKLPL PSAGAISKSR RATCVVL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-732040251388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00461DAPTransfer from AT4G30080Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap462907353
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0712990.0AB071299.1 Oryza sativa OsARF10 mRNA for auxin response factor 10, partial cds.
GenBankAK1003220.0AK100322.1 Oryza sativa Japonica Group cDNA clone:J023079H12, full insert sequence.
GenBankAP0037660.0AP003766.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0009H10.
GenBankAP0053950.0AP005395.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0623A10.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004966255.10.0auxin response factor 18
RefseqXP_004966256.10.0auxin response factor 18
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLK3XVN30.0K3XVN3_SETIT; Auxin response factor
STRINGSi005991m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51637152
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]