PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462906604
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family NF-YC
Protein Properties Length: 539aa    MW: 61720.3 Da    PI: 4.7336
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462906604genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC66.83.9e-21146549100
      NF-YC  49 kacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprde 100
                 +ce+fi eltlr w ha+enkrrt++k+di+ a++rt++fdflvdi p d+
  462906604  14 PTCEMFIKELTLRGWHHAQENKRRTIRKNDISMALSRTEVFDFLVDISPPDK 65 
                58*********************************************99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471135.14E-111362IPR009072Histone-fold
Gene3DG3DSA:1.10.20.103.1E-141560IPR009072Histone-fold
PfamPF008082.0E-61548IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamilySSF813833.14E-8180239IPR001810F-box domain
Gene3DG3DSA:3.80.10.103.5E-28181450IPR032675Leucine-rich repeat domain, L domain-like
PfamPF129379.8E-6187231IPR001810F-box domain
SuperFamilySSF520476.87E-16270359No hitNo description
SuperFamilySSF520476.87E-16387451No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 539 aa     Download sequence    Send to blast
MSKGLQVRHR WSSPTCEMFI KELTLRGWHH AQENKRRTIR KNDISMALSR TEVFDFLVDI  60
SPPDKLIGEF VGLPTTIAEQ PIAPLWKTTE PLPQLPLIKD ELMGAGIGLP KSKSMQYTVT  120
QRNASDPLLL TPPVTVDKVT PHLHLRKVEP DLEYMASSPK KTQDSQVPLC TMDVDPSPLE  180
DSPERDWSEL PLDVLSSIFI KLGSIEILMG AGLVCRSWLM SGKTPELWRF VDMTRHKLVF  240
SKGEDTMCAM AKVAIDRSDG KMESFWAQKF VTDELLDYIV DRANSLKSIR LIGCTYIWTE  300
ALARFASKCP LLEEIECSHH KMPAGLFRYI GKVCPQLKHL RIHMQWFDSD QIMREMAMES  360
RQNDEDEYEE PEESDEAWEA RQNQDAFAIA ESLHELRLLQ MQGNSLTNKG VYAILEGCPH  420
LEFLDISECY HIDVNAELRT CCAKLKHVWL PTRGNLRCPE LHVIGVNEGE DDGLTMHDLW  480
LAEAVSLRAE AEMDNDGSYG DNYWECDCSS PDEPWTHSRN MISDGPRFYS EIHDYDDDW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B7e-1716624894NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap462906604
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010234428.11e-143F-box/LRR-repeat protein 17 isoform X1
RefseqXP_010234429.11e-143F-box/LRR-repeat protein 17 isoform X2
TrEMBLA2YS231e-153A2YS23_ORYSI; Uncharacterized protein
STRINGORGLA08G0046900.11e-153(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP548710
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.24e-20nuclear factor Y, subunit C2