PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462906066 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 172aa MW: 19537.1 Da PI: 9.5116 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 83.2 | 1.6e-26 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+ien + rqvtfskRr+g++KKA+EL vLCda+v v+ fsstg+ly++ss 462906066 9 KKIENMTSRQVTFSKRRTGLFKKAKELAVLCDAQVGVLAFSSTGRLYDFSS 59 68***********************************************96 PP | |||||||
2 | K-box | 55.1 | 3.4e-19 | 61 | 125 | 34 | 98 |
K-box 34 eqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 + R+llG++L+ ++++++++Le+qLe sl +iR kK+ ll++q eel++k ++++een +Lrkk 462906066 61 STRRLLGQNLSGMDFEDIKSLENQLEISLHNIRIKKETLLIQQNEELRHKFDAIHEENINLRKKG 125 67************************************************************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.7E-35 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 28.721 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 9.19E-34 | 3 | 66 | No hit | No description |
PRINTS | PR00404 | 3.7E-25 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 6.02E-27 | 3 | 86 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 7.7E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.7E-25 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.7E-25 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 9.762 | 41 | 134 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 8.0E-17 | 59 | 124 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 172 aa Download sequence Send to blast |
MVRGKTVMKK IENMTSRQVT FSKRRTGLFK KAKELAVLCD AQVGVLAFSS TGRLYDFSSS 60 STRRLLGQNL SGMDFEDIKS LENQLEISLH NIRIKKETLL IQQNEELRHK FDAIHEENIN 120 LRKKGERSAQ KSSATEYSIT SPVEEDDDHH VHLELSQPQH PGKGKPETST LS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the regulation of flowering time in long-day photoperiod. Participates in the repression of FT expression and floral transition, by interacting closely with the FLC-SVP pathways (PubMed:24876250). Functions in the satellite meristemoid lineage of stomatal development (PubMed:17704216). {ECO:0000269|PubMed:17704216, ECO:0000269|PubMed:24876250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462906066 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the micro RNA miR824. {ECO:0000269|PubMed:18579782}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015641670.1 | 2e-52 | MADS-box transcription factor 23-like | ||||
Swissprot | A2RVQ5 | 2e-43 | AGL16_ARATH; Agamous-like MADS-box protein AGL16 | ||||
TrEMBL | A0A0E0LBE3 | 7e-54 | A0A0E0LBE3_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC06G13170.1 | 1e-54 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP129 | 38 | 398 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57230.2 | 4e-46 | AGAMOUS-like 16 |
Publications ? help Back to Top | |||
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