PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462905573

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

CPP

Protein Properties

Length: 294aa MW: 32710.3 Da PI: 8.3179

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462905573	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	29.8	1.2e-09	57	75	4	22
TCR 4 kgCnCkkskClkkYCeCfa 22 ++C+Ckks ClkkYC+C++ 462905573 57 RKCTCKKSGCLKKYCDCYQ 75 79****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01114	0.0078	54	85	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	2.4E-6	57	75	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 294 aa Download sequence Send to blast
MKGMGARRAA ARSPSASSCA PRIAPAPVLP VKFAPTLEAG QDTAEQLIRS PMDLVRRKCT 60 CKKSGCLKKY CDCYQVVAVF DKLESGDSKN SHPPKQCNIV GVILDVKSSL GAPLTLNEGN 120 GAEVDSSDDE EDYYMNRPLS PIPPSPVSRE SSFQQETLVG VEVQTMNGHL YPKPLTQVRP 180 ESSSWQLSSR RPGEESRVEQ WNFSRRPSED RTSDAMEGHA DPKFQRNNKK VESHVDKFSI 240 PRCIEVMNAM TDLSPVEKSL APDVFLNPSN REIFLSLCVE VRTLWLKRKM KSLV

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462905573

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015618281.1	1e-124	protein lin-54
TrEMBL	I1R7P4	1e-122	I1R7P4_ORYGL; Uncharacterized protein
TrEMBL	Q2QMG8	1e-122	Q2QMG8_ORYSJ; Os12g0605300 protein
STRING	OS12T0605300-01	1e-123	(Oryza sativa)
STRING	ORGLA12G0155000.1	1e-123	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9610	28	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14770.1	4e-07	TESMIN/TSO1-like CXC 2