PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462905549
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family CPP
Protein Properties Length: 574aa    MW: 62721 Da    PI: 6.4941
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462905549genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR48.61.6e-15455495242
        TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 
                ++k+C+CkkskClk+YCeCfaag +C+e C+C++C N++++
  462905549 455 SCKKCSCKKSKCLKLYCECFAAGIYCTEPCSCQGCLNNHDN 495
                689**********************************9875 PP
2TCR40.94e-13540574135
        TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCed 35 
                ++k+gCnCkks+C kkYCeCf+ g+ Cs +C+Ce+
  462905549 540 RHKRGCNCKKSSCTKKYCECFQGGVGCSVSCRCEG 574
                589******************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011143.3E-16454495IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163433.401455574IPR005172CRC domain
PfamPF036381.6E-11457492IPR005172CRC domain
SMARTSM011141.4E-9540574IPR033467Tesmin/TSO1-like CXC domain
PfamPF036383.6E-9542573IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 574 aa     Download sequence    Send to blast
DSPVFNFINN LSPIPPPKPS DSAHNVQLFK SSDLAPVSSI FASPHVPPTK EPKLLMRDDS  60
VQFAQESHSP NSVRTRTGTT SSFRLIRCRN IVSENRNITC NLNEASIDSL DDASNSESKL  120
PQSTQNGIGS EATDKNQHAD GKTDLNISQE CKDLEGIILD QSGPDNTDPS HSGKDVHENQ  180
LSEQNEDEVA TYDEGYLITQ EPIGDMLTLA VPFEAETQSA NDTINMDNAY PCKSLPNDNS  240
NGYYIQNSAH EPHHYWAGPV EGVAVDKSTP QMPPDALQLH LMPNDQACKK LNEPSDYMPT  300
KQNVLVLLLW QALSQHLRGT RRRSLFNEKA GATSKGVNKA SDRHFASSTT PKCKINSSDN  360
SKPLRTPPCA LPGIGLHLNA LAAIPKEKMV PQDTQLVISQ CSNLPCHLGF SPPPYEQSII  420
SDDFAQTTNI VSAEDASQGS PKKKRHKFDN GDGTSCKKCS CKKSKCLKLY CECFAAGIYC  480
TEPCSCQGCL NNHDNMATVL STRQQIESRN PLAFAPKVIH TSETDQELGD YPNKTPASAR  540
HKRGCNCKKS SCTKKYCECF QGGVGCSVSC RCEG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A7e-1245757412117Protein lin-54 homolog
5fd3_B7e-1245757412117Protein lin-54 homolog
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap462905549
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004963116.10.0protein tesmin/TSO1-like CXC 2
TrEMBLA0A368QN900.0A0A368QN90_SETIT; Uncharacterized protein
STRINGSi021159m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP127462630
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14770.12e-59TESMIN/TSO1-like CXC 2