PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462904716
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family ERF
Protein Properties Length: 280aa    MW: 30600.2 Da    PI: 5.1322
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462904716genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.21.8e-17123170555
        AP2   5 GVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                GVr ++ +g+++AeIrd + ng   r+++g+f+t+eeAa a+++a+ +++g
  462904716 123 GVRTRP-WGKYAAEIRDSTRNG--ERVWIGTFDTPEEAALAYDQAAYSMRG 170
                9**999.**********44465..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103220.152120178IPR001471AP2/ERF domain
PRINTSPR003672.2E-7121132IPR001471AP2/ERF domain
SuperFamilySSF541711.63E-20121180IPR016177DNA-binding domain
PfamPF008472.0E-12122170IPR001471AP2/ERF domain
SMARTSM003807.7E-28123184IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.9E-27123179IPR001471AP2/ERF domain
CDDcd000181.65E-22123179No hitNo description
PRINTSPR003672.2E-7144160IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006952Biological Processdefense response
GO:0009873Biological Processethylene-activated signaling pathway
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MDPHFSNSYY YGGDAVSHNT YDYAQEEQHG VVPPAAVAAG CNNGSYYSNN SSAAYDDHHH  60
LTYFGSSTEP AWASSNSSQQ LHFGGDQYYY SCQEEEIGVD QVSALMDAAS ISNKPMNSAS  120
LIGVRTRPWG KYAAEIRDST RNGERVWIGT FDTPEEAALA YDQAAYSMRG DAAVLNYPVE  180
HVQESLRALR LSCAAGDSPV LALKQRHCIR KRTPKNKINK DSASSSESSG QTTTTSQGRH  240
GKKKQQQAAS SSSYVLELED LGADYLEELL ALSSTDQSNY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-271231811775Ethylene-responsive transcription factor ERF096
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00374DAPTransfer from AT3G23240Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap462904716
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1306026e-38AC130602.5 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone B1122D01, complete sequence.
GenBankAP0149616e-38AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004959050.14e-77ethylene-responsive transcription factor 1
TrEMBLK4A2J19e-76K4A2J1_SETIT; Uncharacterized protein
STRINGSi033089m2e-76(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27737249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.16e-42ethylene response factor 1