PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462904594
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family MYB
Protein Properties Length: 297aa    MW: 31861.2 Da    PI: 5.7218
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462904594genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.64.6e-161562148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEde+l d++ ++G g+W++ + + g++R +k+c++rw +yl
        462904594 15 KGLWSPEEDEKLRDYIIRYGHGCWSALPGKAGLNRNGKSCRLRWINYL 62
                     678*******************************************97 PP
2Myb_DNA-binding53.74.7e-1769113248
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      g +++eE+e    +++ lG++ W++Iar+++ gRt++++k++w++yl
        462904594  69 GMFSPEEEETVMSLHAALGNK-WSRIARHLP-GRTDNEVKNYWNSYL 113
                      569******************.*********.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.7021062IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.4E-211065IPR009057Homeodomain-like
SuperFamilySSF466897.11E-2912109IPR009057Homeodomain-like
SMARTSM007171.3E-121464IPR001005SANT/Myb domain
PfamPF002491.1E-131562IPR001005SANT/Myb domain
CDDcd001677.74E-111862No hitNo description
PROSITE profilePS5129425.12363117IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.3E-2566116IPR009057Homeodomain-like
SMARTSM007176.3E-1467115IPR001005SANT/Myb domain
PfamPF002491.8E-1569113IPR001005SANT/Myb domain
CDDcd001676.17E-1271113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0010018Biological Processfar-red light signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MGCKACEKPK PSYRKGLWSP EEDEKLRDYI IRYGHGCWSA LPGKAGLNRN GKSCRLRWIN  60
YLRPGLKHGM FSPEEEETVM SLHAALGNKW SRIARHLPGR TDNEVKNYWN SYLKKRVEGK  120
EAGASTPAPT TATNSADDSD DSQSVKAAGD GTAHELPSSD SDSSEPRESS SADSSCLTGP  180
HHHPACRPHA PVAPKVMFAD WLDMDYISSG QVAAAPGLDA VGAGASPGDH HQVASQGSVQ  240
VDGPCGVDVS SLTSLHGGFG DSGAGCWEFQ EQFDGMDQMQ TGGFCDLLSM SEFFGLN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-25111183109B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes photomorphogenesis in the light by participating in the transmission of phytochrome A (phyA) signals to downstream responses (PubMed:11581165, PubMed:19482971). Probably acts by activating expression of light-induced genes. In darkness, its degradation prevents the activation of light-induced genes (PubMed:11581165). {ECO:0000269|PubMed:11581165, ECO:0000269|PubMed:19482971}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462904594
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By hormones or elicitors treatment. By exposure to abiotic stress. {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0387441e-151BT038744.1 Zea mays full-length cDNA clone ZM_BFb0323B03 mRNA, complete cds.
GenBankHQ8587141e-151HQ858714.1 Zea mays clone UT1170 MYB transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004953256.11e-158transcription factor MYB4
SwissprotQ9M0K43e-55LAF1_ARATH; Transcription factor LAF1
TrEMBLK3YUK11e-156K3YUK1_SETIT; Uncharacterized protein
STRINGSi017947m1e-157(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP170737109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25560.14e-56myb domain protein 18
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]