PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462904564
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family B3
Protein Properties Length: 198aa    MW: 22645.6 Da    PI: 9.9096
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462904564genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.44.1e-16114193186
                EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                f+k++t+s+v+   +l lp +f++++  kk  +  +tl +e+ +++e  +     +++  l++GW++F+ +++L +gD +vF+l++
  462904564 114 FVKAMTQSHVTGGFWLGLPIDFCRKYLPKK--DEHITLVNEDDEEFETLY--LAAKRG--LSAGWRGFAIDHNLVDGDCLVFELTE 193
                89************************5443..446***************..555555..9**********************875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.5E-18108197IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.46E-22108197IPR015300DNA-binding pseudobarrel domain
CDDcd100171.14E-22112196No hitNo description
SMARTSM010197.6E-14114198IPR003340B3 DNA binding domain
PfamPF023625.2E-14114194IPR003340B3 DNA binding domain
PROSITE profilePS5086311.646114198IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MAEAVSYEEQ RRRQIEANRR KLEELQLYQL SAAAKPSPAK RRKPRVPRNA AGAEADVPRR  60
SGRVANLPQK PQSSGRGKRR DLDDRVYATE EERSYAITKA EELEKGLKSR SPRFVKAMTQ  120
SHVTGGFWLG LPIDFCRKYL PKKDEHITLV NEDDEEFETL YLAAKRGLSA GWRGFAIDHN  180
LVDGDCLVFE LTEPRTFK
Cis-element ? help Back to Top
SourceLink
PlantRegMap462904564
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004972573.16e-92B3 domain-containing protein Os06g0194400
SwissprotQ69V364e-85Y6944_ORYSJ; B3 domain-containing protein Os06g0194400
TrEMBLA0A368RHI41e-90A0A368RHI4_SETIT; Uncharacterized protein
STRINGSi014404m2e-91(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP175638103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.14e-50B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]